<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15190

Description Uncharacterized protein
SequenceMVYLQPLLEQIMATSQHTWSEKTLRYFPPLIRDFLMVRADKRGQAIQAWQQAETTVINQCNQLLSPSAEPNYVMTYLSHSFPQHRRYLCAGAWMLMNGHPEINSANLARVLREFSPEEVTANIYTMVDVLLHHIQLELQRGHLVQDLLSKAITNLAFFVWTHELVPLDIVLLALIDRDDDPYALRLVISLLERPELQHRIKAFCSSRSPEHWLKNQPPKRAELQKALGNHLSWKDRYPTFFDDIAARLLPVIPLIIYRLIENDATDIADRVLAFYSTFLAFHPLRFTFVRDILAYFYGHLPSKLIVRILNVLGVSTKTPFSESFAQYLGSSNSSICPPPEYFANLLLGLVNNVIPPLSSKSKSNPADASGGRTNFSKPHASTQAGGNSNTDAQRAFYQNQDPGSYTQLVLETAAIEILSLSVPASQIVSSLVQLIAHVQAMLIQSNTGQGMSAGLGQNSGLPTSPSGAGAESAGASRANTSASGISANFVSRSGYSCQQLSVLMIQACGFLLAQLPPEFHMQLYSEAARIIKDCRWLSDSSRPVKELNSAVGYALLDPTWASQDSTSTAIGNIVALLHSFFSNLPQEWLESSHTVIKHLRPVTSVAMLRIAFRILGPLLPRLAFARPLFMKTLALLFNVLGDVFGKNSQASPHVPASEIGDIIDFLHHAVMYEGQGGPVQSTSKPKVEILTLCGKVVDMLRPDVQHLLSHLKTDPTSSIYAATHPKLVQQHPS
Length733
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.08
Grand average of hydropathy-0.001
Instability index43.75
Isoelectric point7.73
Molecular weight81123.22
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15190
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.70|      15|      15|     312|     326|       1
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  312-  326 (27.11/15.57)	LGVSTKT..PFSESFAQ
  328-  344 (24.58/13.43)	LGSSNSSicPPPEYFAN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     378.46|     105|     115|      63|     167|       2
---------------------------------------------------------------------------
   63-  167 (181.70/109.14)	LLSPSAEP...NYVMTYLSHSFPQHR.RYLCAG....AWMLMNGHP..EINSA.NLARVL.REFSPEEVTANIYTMVDV.LLHH....IQLE.LQRGHLV....Q.DLLSKAITNLAFFVWTHELVPL
  174-  284 (141.12/83.15)	LIDRDDDPyalRLVISLLERPELQHRiKAFCSSrspeHW.LKNQPP..K..RA.ELQKALgNHLSWKDRYPTFFDDIAArLLPV....IPLI.IYR..LI....EnDATDIADRVLAFYSTFLAFHPL
  536-  612 (55.64/28.43)	......................................WLSDSSRPvkELNSAvGYALLD.PTWASQDSTSTAIGNIVA.LLHSffsnLPQEwLESSHTVikhlR.PVTSVAMLRIAF..........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     195.36|      64|     271|     371|     439|       3
---------------------------------------------------------------------------
  371-  435 (104.47/89.53)	GRtNFSKPHASTQAGGNS......NTDAQ..RAFYQNQDPGSYTQL.VLETAAIEILSLSVPAS...QIVSSLVQLI
  456-  531 (90.90/62.30)	GQ.NSGLPTSPSGAGAESagasraNTSASgiSANFVSRSGYSCQQLsVLMIQACGFLLAQLPPEfhmQLYSEAARII
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.39|      10|      22|       3|      12|       5
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    3-   12 (18.02/ 9.79)	YLQPLLEQIM
   26-   35 (19.37/11.08)	YFPPLIRDFL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15190 with Med23 domain of Kingdom Viridiplantae
Unable to open file!