<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15189

Description Uncharacterized protein
SequenceELVRSNLQFLENIPDDDALICIIMEIHRRRDMVCMHMQMLDQHLHCPTFGTHRFLSQSYPSIAGESVANLRYSPITYPSVLGEPLHGEDLANSIPKGGLDWERALRCLRHALRTTPSPDWWRRVLLVAPCYRSHSQTSTPGAVFSPDMIGEAVADRTIELLKLTNSETQCWQDWLLFADIFFFLMKSGCIDFLDFVDKLASRVTNGDQQILCSNHVTWLLAQIIRIEIVTNTLSSDPRKVETTRKIISFHKEDKGLDPNNISPQSILLDFISSSQTLRIWSFNTSIREHLNSDQLQKGKQIDEWWKQMTKASGERMIDFMNLDERAMGMFWVLSFTMAQPACDAVMTWFTSAGGAEFMQGPNMQPNERVTMMHETYPLSMSLLSGLSINLCLKLAFQLEETIFLGQAVPSIAMVETYVRLLLITPHSLFRPHFTTLTQRCPSILSKAGVSLLLLEILNYRLLPLYR
Length466
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.09
Grand average of hydropathy-0.058
Instability index42.36
Isoelectric point6.07
Molecular weight53277.08
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15189
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     124.49|      38|     346|      54|      95|       1
---------------------------------------------------------------------------
   54-   95 (56.73/47.29)	FLSQSYPSIAG.ESVanLRYSPITyPSVLGEPlHGEDLANSIP
  403-  441 (67.76/40.32)	FLGQAVPSIAMvETY..VRLLLIT.PHSLFRP.HFTTLTQRCP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.04|      15|      41|     162|     176|       2
---------------------------------------------------------------------------
  162-  176 (30.95/18.38)	KLTNSETQ..CWQD..WLL
  202-  220 (21.09/10.45)	RVTNGDQQilCSNHvtWLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.06|      10|      21|     107|     116|       4
---------------------------------------------------------------------------
  107-  116 (20.11/14.25)	CLR.HALRTTP
  130-  140 (16.95/10.84)	CYRsHSQTSTP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15189 with Med23 domain of Kingdom Viridiplantae
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