<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15188

Description Uncharacterized protein
SequenceQDLLSKAITNLAFFVWTHELVPLDIVLLALIDRDDDPYALRLVISLLERPELQHRIKAFCSSRSPEHWLKNQPPKRAELQKALGNHLSWKDRYPTFFDDIAARLLPVIPLIIYRLIENDATDIADRVLAFYSTFLAFHPLRFTFVRDILAYFYGHLPSKLIVRILNVLGVSTKTPFSESFAQYLGSSNSSICPPPEYFANLLLGLVNNVIPPLSSKSKSNPADASGGRTNFSKPHASTQAGGNSNTDAQRAFYQNQDPGSYTQLVLETAAIEILSLSVPASQIVSSLVQLIAHVQAMLIQSNTGQGMSAGLGQNSGLPTSPSGAGAESAGASRANTSASGISANFVSRSGYSCQQLSVLMIQACGFLLAQLPPEFHMQLYSEAARIIKDCRWLSDSSRPVKELNSAVGYALLDPTWASQDSTSTAIGNIVALLHSFFSNLPQEWLESSHTVIKHLRPVTSVAMLRIAFRILGPLLPRLAFARPLFMKTLALLFNVLGDVFGKNSQASPHVPASEIGDIIDFLHHAVMYEGQGGPVQSTSKPKVEILTLCGKVVDMLRPDVQHLLSHLKTDPTSSIYAATHPKLVQQHPS
Length589
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.08
Grand average of hydropathy0.049
Instability index42.95
Isoelectric point8.17
Molecular weight64393.10
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15188
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     248.51|      55|     111|     217|     271|       1
---------------------------------------------------------------------------
  173-  223 (64.98/26.28)	....KTPF.SESFAQYLGSSNSSICPPPEYFANLLLGLV.NNVI...PPLsskSKSNPAD
  224-  281 (87.64/37.38)	ASGGRTNF.SKPHASTQAGGNSNTDAQRAFYQNQDPGSY.TQLVLETAAIeilSLSVPAS
  309-  337 (36.49/12.33)	AGLGQ.NS.GLPTSPSGAGAESAG............................aSRAN.TS
  338-  386 (59.40/23.55)	ASGISANFvSRSGYSCQQLSVLMIQAC.GFLLAQLPPEFhMQLYSEAARI..........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.56|      20|      23|     464|     483|       2
---------------------------------------------------------------------------
  464-  483 (34.78/19.47)	LRIAFRILGPLLPRLAFARP
  489-  508 (33.78/18.72)	LALLFNVLGDVFGKNSQASP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.44|      12|      21|     392|     412|       3
---------------------------------------------------------------------------
  392-  408 (16.05/13.30)	WLSDSSrpvkeLNSAVG
  416-  427 (21.39/11.04)	WASQDS.....TSTAIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.78|      16|      20|     127|     146|       7
---------------------------------------------------------------------------
  127-  146 (19.50/21.11)	VLAFYSTFLafhPLRFtFVR
  148-  163 (29.28/15.28)	ILAYFYGHL...PSKL.IVR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.30|      11|     506|      43|      54|       8
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   43-   54 (15.78/15.20)	VISLLeRPELQH
  552-  562 (21.51/14.90)	VVDML.RPDVQH
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15188 with Med23 domain of Kingdom Viridiplantae
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