<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15184

Description Uncharacterized protein
SequenceASSEMDGGHGQRQPLSPAISATAVLPHQRQMQLLQHPARPAIADLFTLYLGVNSKQRVEDPARETSNKLQKRVSAHTRDLPPRDEQFISDFEELCMPFPDQEQLQAVTESVLISFVLQCSSHAPQSQFLLFATQCLCARGHLRWDSLIPSLLSAVSSAEAPMGQGGSVSVGGPVSSSSAIAVPNAPSFHASNPTSPLSAMNTIGSPTQSGIDQPVGANVSPMKAAEFSTLGQPGTTSRGDQSRRGAQVSYLHHLSCRIILAGLESNLKPATHAVIFHHMVNWLVNWDQRPHGVDEADTMQTSRIGRPVHEWMHLCLDVIWILVDEEKCRIPFXXXXXXNLQFLENIPDDDALICIIMEIHRRRDMVCMHMQMLDQHLHCPTFGTHRFLSQSYPSIAGESVANLRYSPITYPSVLGEPLHGEDLANSIPKGGLDWERALRCLRHALRTTPSPDWWRRVLLVAPCYRSHSQTSTPGAVFSPDMIGEAVADRTIELLKLTNSETQCWQDWLLFADIFFFLMKSGCIDFLDFVDKLASRVTNGDQQILCSNHVTWLLAQIIRIEIVTNTLSSDPRKVETTRKIISFHKEDKGLDPNNISPQSILLDFISSSQTLRIWSFNTSIREHLNSDQLQKGKQIDEWWKQMTKASGERMIDFMNLDERAMGMFWVLSFTMAQPACDAVMTWFTSAGGAEFMQGPNMQPNERVTMMHETYPLSMSLLSGLSINLCLKLAFQLEETIFLGQAVPSIAMVETYVRLLLITPHSLFRPHFTTLTQRCPSILSKAGVSLLLLEILNYRLLPLYRYHGKSKALMYDVTKIISMIKGKRGEHRLFRLAENLCMNLILSLRDFFLVKKELKGPTEFTETLNRITIISLAITIKTRGIAEVEHMVYLQPLLEQIMATSQHTWSEKTLRYFPPLIRDFLMVRADKRGQAIQAWQQAETTVINQCNQLLSPSAEPNYVMTYLSHSFPQHRRYLCAGAWMLMNGHPEINSANLARVLREFSPEEVTANIYTMVDVLLHHIQLELQRGHLVQDLLSKAITNLAFFVWTHELVPLDIVLLALIDRDDDPYALRLVISLLERPELQHRIKAFCSSRSPEHWLKNQPPKRAELQKALGNHLSWKDRYPTFFDDIAARLLPVIPLIIYRLIENDATDIADRVLAFYSTFLAFHPLRFTFVRDILAYFYGHLPSKLIVRILNVLGVSTKTPFSESFAQYLGSSNSSICPPPEYFANLLLGLVNNVIPPLSSKSKSNPADASGGRTNFSKPHASTQAGGNSNTDAQRAFYQNQDPGSYTQLVLETAAIEILSLSVPASQIVSSLVQLIAHVQAMLIQSNTGQGMSAGLGQNSGLPTSPSGAGAESAGASRANTSASGISANFVSRSGYSCQQLSVLMIQACGFLLAQLPPEFHMQLYSEAARIIKDCRWLSDSSRPVKELNSAVGYALLDPTWASQDSTSTAIGNIVALLHSFFSNLPQEWLESSHTVIKHLRPVTSVAMLRIAFRILGPLLPRLAFARPLFMKTLALLFNVLGDVFGKNSQASPHVPASEIGDIIDFLHHAVMYEGQGGPVQSTSKPKVEILTLCGKVVDMLRPDVQHLLSHLKTDPTSSIYAATHPKLVQQHPS
Length1617
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.08
Grand average of hydropathy-0.064
Instability index44.61
Isoelectric point6.91
Molecular weight179704.67
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of gene expression	GO:0010628	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15184
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.93|      16|      22|     434|     449|       1
---------------------------------------------------------------------------
  434-  449 (32.24/21.75)	WERAL...RCLR.HALRTTP
  454-  473 (24.69/14.68)	WRRVLlvaPCYRsHSQTSTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.17|      21|      22|     155|     175|       2
---------------------------------------------------------------------------
  155-  175 (36.11/23.18)	VSSAEAPMGQGGSVSVGGPVS
  200-  220 (37.07/24.01)	MNTIGSPTQSGIDQPVGANVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      93.95|      21|      22|    1420|    1440|       3
---------------------------------------------------------------------------
 1420- 1440 (36.65/22.18)	WLSDSSRPVKELNSAVG..YALL
 1444- 1461 (22.05/10.37)	WASQDS.....TSTAIGniVALL
 1472- 1492 (35.25/21.05)	WLESSHTVIKHLRPVTS..VAML
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.56|      16|      22|    1496|    1511|       5
---------------------------------------------------------------------------
 1496- 1511 (29.00/18.27)	FRILGPLLPRLAFARP
 1521- 1536 (28.57/17.87)	FNVLGDVFGKNSQASP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.70|      15|      16|    1196|    1210|       6
---------------------------------------------------------------------------
 1196- 1210 (27.11/14.49)	LGVSTKT..PFSESFAQ
 1212- 1228 (24.58/12.44)	LGSSNSSicPPPEYFAN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.64|      13|      16|     386|     398|       7
---------------------------------------------------------------------------
  386-  398 (24.35/17.71)	RFLSQSYPSIAGE
  404-  416 (25.28/18.76)	RYSPITYPSVLGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     298.71|      88|     348|     706|     795|       9
---------------------------------------------------------------------------
  706-  795 (140.84/85.63)	HETYPLSMSLLSGLSIN...LCLKLAFQLEETIFLGQAVPSI...AMVETYV...RLLLITPHSlfRPHF..TTLTQ..........RCPS...ILSKAGVSLL.LLEILNYRLL
  927-  980 (45.05/20.53)	...................................GQAIQAW...QQAETTVinqCNQLLSPSA..EPNYvmTYLSH..........SFPQhrrYLC.AGAWML.M.........
 1046- 1144 (112.82/62.77)	HELVPLDIVLLALIDRDddpYALRLVISLLERPELQHRIKAFcssRSPEHWL...KNQ...P.....PKR..AELQKalgnhlswkdRYPT...FFDDIAARLLpVIPLIIYRLI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.39|      10|      22|     887|     896|      10
---------------------------------------------------------------------------
  887-  896 (18.02/10.58)	YLQPLLEQIM
  910-  919 (19.37/12.05)	YFPPLIRDFL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.00|      14|      23|    1149|    1163|      11
---------------------------------------------------------------------------
 1149- 1163 (19.78/16.14)	TDIADrVLAFYSTFL
 1171- 1184 (26.22/16.29)	TFVRD.ILAYFYGHL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.24|      12|      23|     349|     360|      12
---------------------------------------------------------------------------
  349-  360 (21.94/12.45)	DDALICIIMEIH
  374-  385 (25.30/15.52)	DQHLHCPTFGTH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      85.18|      21|      22|     569|     589|      13
---------------------------------------------------------------------------
  569-  589 (32.58/20.00)	DPRKVETT.RKIISFHKEDKGL
  590-  610 (30.45/18.19)	DPNNISPQ.SILLDFISSSQTL
  611-  631 (22.15/11.14)	RIWSFNTSiREHLNSDQLQKG.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.33|      10|      43|     503|     513|      14
---------------------------------------------------------------------------
  503-  513 (17.87/13.14)	CwQDWLLFADI
  522-  531 (18.45/ 7.51)	C.IDFLDFVDK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.23|      11|      15|     109|     119|      15
---------------------------------------------------------------------------
  109-  119 (18.94/11.32)	ESVLISFVLQC
  125-  135 (20.29/12.68)	QSQFLLFATQC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.80|      17|      43|     637|     656|      17
---------------------------------------------------------------------------
  637-  656 (27.10/27.74)	WwkqMTKASGERMIDFMNLD
  681-  697 (33.70/22.53)	W...FTSAGGAEFMQGPNMQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15184 with Med23 domain of Kingdom Viridiplantae
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