<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15184

Description Uncharacterized protein
SequenceASSEMDGGHGQRQPLSPAISATAVLPHQRQMQLLQHPARPAIADLFTLYLGVNSKQRVEDPARETSNKLQKRVSAHTRDLPPRDEQFISDFEELCMPFPDQEQLQAVTESVLISFVLQCSSHAPQSQFLLFATQCLCARGHLRWDSLIPSLLSAVSSAEAPMGQGGSVSVGGPVSSSSAIAVPNAPSFHASNPTSPLSAMNTIGSPTQSGIDQPVGANVSPMKAAEFSTLGQPGTTSRGDQSRRGAQVSYLHHLSCRIILAGLESNLKPATHAVIFHHMVNWLVNWDQRPHGVDEADTMQTSRIGRPVHEWMHLCLDVIWILVDEEKCRIPFXXXXXXNLQFLENIPDDDALICIIMEIHRRRDMVCMHMQMLDQHLHCPTFGTHRFLSQSYPSIAGESVANLRYSPITYPSVLGEPLHGEDLANSIPKGGLDWERALRCLRHALRTTPSPDWWRRVLLVAPCYRSHSQTSTPGAVFSPDMIGEAVADRTIELLKLTNSETQCWQDWLLFADIFFFLMKSGCIDFLDFVDKLASRVTNGDQQILCSNHVTWLLAQIIRIEIVTNTLSSDPRKVETTRKIISFHKEDKGLDPNNISPQSILLDFISSSQTLRIWSFNTSIREHLNSDQLQKGKQIDEWWKQMTKASGERMIDFMNLDERAMGMFWVLSFTMAQPACDAVMTWFTSAGGAEFMQGPNMQPNERVTMMHETYPLSMSLLSGLSINLCLKLAFQLEETIFLGQAVPSIAMVETYVRLLLITPHSLFRPHFTTLTQRCPSILSKAGVSLLLLEILNYRLLPLYRYHGKSKALMYDVTKIISMIKGKRGEHRLFRLAENLCMNLILSLRDFFLVKKELKGPTEFTETLNRITIISLAITIKTRGIAEVEHMVYLQPLLEQIMATSQHTWSEKTLRYFPPLIRDFLMVRADKRGQAIQAWQQAETTVINQCNQLLSPSAEPNYVMTYLSHSFPQHRRYLCAGAWMLMNGHPEINSANLARVLREFSPEEVTANIYTMVDVLLHHIQLELQRGHLVQDLLSKAITNLAFFVWTHELVPLDIVLLALIDRDDDPYALRLVISLLERPELQHRIKAFCSSRSPEHWLKNQPPKRAELQKALGNHLSWKDRYPTFFDDIAARLLPVIPLIIYRLIENDATDIADRVLAFYSTFLAFHPLRFTFVRDILAYFYGHLPSKLIVRILNVLGVSTKTPFSESFAQYLGSSNSSICPPPEYFANLLLGLVNNVIPPLSSKSKSNPADASGGRTNFSKPHASTQAGGNSNTDAQRAFYQNQDPGSYTQLVLETAAIEILSLSVPASQIVSSLVQLIAHVQAMLIQSNTGQGMSAGLGQNSGLPTSPSGAGAESAGASRANTSASGISANFVSRSGYSCQQLSVLMIQACGFLLAQLPPEFHMQLYSEAARIIKDCRWLSDSSRPVKELNSAVGYALLDPTWASQDSTSTAIGNIVALLHSFFSNLPQEWLESSHTVIKHLRPVTSVAMLRIAFRILGPLLPRLAFARPLFMKTLALLFNVLGDVFGKNSQASPHVPASEIGDIIDFLHHAVMYEGQGGPVQSTSKPKVEILTLCGKVVDMLRPDVQHLLSHLKTDPTSSIYAATHPKLVQQHPS
Length1617
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.08
Grand average of hydropathy-0.064
Instability index44.61
Isoelectric point6.91
Molecular weight179704.67
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of gene expression	GO:0010628	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15184
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.93|      16|      22|     434|     449|       1
---------------------------------------------------------------------------
  434-  449 (32.24/21.75)	WERAL...RCLR.HALRTTP
  454-  473 (24.69/14.68)	WRRVLlvaPCYRsHSQTSTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.17|      21|      22|     155|     175|       2
---------------------------------------------------------------------------
  155-  175 (36.11/23.18)	VSSAEAPMGQGGSVSVGGPVS
  200-  220 (37.07/24.01)	MNTIGSPTQSGIDQPVGANVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      93.95|      21|      22|    1420|    1440|       3
---------------------------------------------------------------------------
 1420- 1440 (36.65/22.18)	WLSDSSRPVKELNSAVG..YALL
 1444- 1461 (22.05/10.37)	WASQDS.....TSTAIGniVALL
 1472- 1492 (35.25/21.05)	WLESSHTVIKHLRPVTS..VAML
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.56|      16|      22|    1496|    1511|       5
---------------------------------------------------------------------------
 1496- 1511 (29.00/18.27)	FRILGPLLPRLAFARP
 1521- 1536 (28.57/17.87)	FNVLGDVFGKNSQASP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.70|      15|      16|    1196|    1210|       6
---------------------------------------------------------------------------
 1196- 1210 (27.11/14.49)	LGVSTKT..PFSESFAQ
 1212- 1228 (24.58/12.44)	LGSSNSSicPPPEYFAN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.64|      13|      16|     386|     398|       7
---------------------------------------------------------------------------
  386-  398 (24.35/17.71)	RFLSQSYPSIAGE
  404-  416 (25.28/18.76)	RYSPITYPSVLGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     298.71|      88|     348|     706|     795|       9
---------------------------------------------------------------------------
  706-  795 (140.84/85.63)	HETYPLSMSLLSGLSIN...LCLKLAFQLEETIFLGQAVPSI...AMVETYV...RLLLITPHSlfRPHF..TTLTQ..........RCPS...ILSKAGVSLL.LLEILNYRLL
  927-  980 (45.05/20.53)	...................................GQAIQAW...QQAETTVinqCNQLLSPSA..EPNYvmTYLSH..........SFPQhrrYLC.AGAWML.M.........
 1046- 1144 (112.82/62.77)	HELVPLDIVLLALIDRDddpYALRLVISLLERPELQHRIKAFcssRSPEHWL...KNQ...P.....PKR..AELQKalgnhlswkdRYPT...FFDDIAARLLpVIPLIIYRLI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.39|      10|      22|     887|     896|      10
---------------------------------------------------------------------------
  887-  896 (18.02/10.58)	YLQPLLEQIM
  910-  919 (19.37/12.05)	YFPPLIRDFL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.00|      14|      23|    1149|    1163|      11
---------------------------------------------------------------------------
 1149- 1163 (19.78/16.14)	TDIADrVLAFYSTFL
 1171- 1184 (26.22/16.29)	TFVRD.ILAYFYGHL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.24|      12|      23|     349|     360|      12
---------------------------------------------------------------------------
  349-  360 (21.94/12.45)	DDALICIIMEIH
  374-  385 (25.30/15.52)	DQHLHCPTFGTH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      85.18|      21|      22|     569|     589|      13
---------------------------------------------------------------------------
  569-  589 (32.58/20.00)	DPRKVETT.RKIISFHKEDKGL
  590-  610 (30.45/18.19)	DPNNISPQ.SILLDFISSSQTL
  611-  631 (22.15/11.14)	RIWSFNTSiREHLNSDQLQKG.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.33|      10|      43|     503|     513|      14
---------------------------------------------------------------------------
  503-  513 (17.87/13.14)	CwQDWLLFADI
  522-  531 (18.45/ 7.51)	C.IDFLDFVDK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.23|      11|      15|     109|     119|      15
---------------------------------------------------------------------------
  109-  119 (18.94/11.32)	ESVLISFVLQC
  125-  135 (20.29/12.68)	QSQFLLFATQC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.80|      17|      43|     637|     656|      17
---------------------------------------------------------------------------
  637-  656 (27.10/27.74)	WwkqMTKASGERMIDFMNLD
  681-  697 (33.70/22.53)	W...FTSAGGAEFMQGPNMQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15184 with Med23 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SKSNPADASGGRTNFSKPHASTQAGGNSNTDAQRAFY
1245
1281










Molecular Recognition Features






MoRF SequenceStartStop




NANANA