<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15182

Description Uncharacterized protein
SequenceGDLVSCFLSCGLQIGSDFVRSTVNKLQKRVSAHTRDLPPRDEQFISDFEELCMPFPDQEQLQAVTESVLISFVLQCSSHAPQSQFLLFATQCLCARGHLRWDSLIPSLLSAVSSAEAPMGQGGSVSVGGPVSSSSAIAVPNAPSFHASNPTSPLSAMNTIGSPTQSGIDQPVGANVSPMKAAEFSTLGQPGTTSRGDQSRRGAQVSYLHHLSCRIILAGLESNLKPATHAVIFHHMVNWLVNWDQRPHGVDEADTMQTSRIGRPVHEWMHLCLDVIWILVDEEKCRIPFXXXXXXNLQFLENIPDDDALICIIMEIHRRRDMVCMHMQMLDQHLHCPTFGTHRFLSQSYPSIAGESVANLRYSPITYPSVLGEPLHGEDLANSIPKGGLDWERALRCLRHALRTTPSPDWWRRVLLVAPCYRSHSQTSTPGAVFSPDMIGEAVADRTIELLKLTNSETQCWQDWLLFADIFFFLMKSGCIDFLDFVDKLASRVTNGDQQILCSNHVTWLLAQIIRIEIVTNTLSSDPRKVETTRKIISFHKEDKGLDPNNISPQSILLDFISSSQTLRIWSFNTSIREHLNSDQLQKGKQIDEWWKQMTKASGERMIDFMNLDERAMGMFWVLSFTMAQPACDAVMTWFTSAGGAEFMQGPNMQPNERVTMMHETYPLSMSLLSGLSINLCLKLAFQLEETIFLGQAVPSIAMVETYVRLLLITPHSLFRPHFTTLTQRCPSILSKAGVSLLLLEILNYRLLPLYRYHGKSKALMYDVTKIISMIKGKRGEHRLFRLAENLCMNLILSLRDFFLVKKELKGPTEFTETLNRITIISLAITIKTRGIAEVEHMVYLQPLLEQIMATSQHTWSEKTLRYFPPLIRDFLMVRADKRGQAIQAWQQAETTVINQCNQLLSPSAEPNYVMTYLSHSFPQHRRYLCAGAWMLMNGHPEINSANLARVLREFSPEEVTANIYTMVDVLLHHIQLELQRGHLVQDLLSKAITNLAFFVWTHELVPLDIVLLALIDRDDDPYALRLVISLLERPELQHRIKAFCSSRSPEHWLKNQPPKRAELQKALGNHLSWKDRYPTFFDDIAARLLPVIPLIIYRLIENDATDIADRVLAFYSTFLAFHPLRFTFVRDILAYFYGHLPSKLIVRILNVLGVSTKTPFSESFAQYLGSSNSSICPPPEYFANLLLGLVNNVIPPLSSKSKSNPADASGGRTNFSKPHASTQAGGNSNTDAQRAFYQNQDPGSYTQLVLETAAIEILSLSVPASQIVSSLVQLIAHVQAMLIQSNTGQGMSAGLGQNSGLPTSPSGAGAESAGASRANTSASGISANFVSRSGYSCQQLSVLMIQACGFLLAQLPPEFHMQLYSEAARIIKDCRWLSDSSRPVKELNSAVGYALLDPTWASQDSTSTAIGNIVALLHSFFSNLPQEWLESSHTVIKHLRPVTSVAMLRIAFRILGPLLPRLAFARPLFMKTLALLFNVLGDVFGKNSQASPHVPASEIGDIIDFLHHAVMYEGQGGPVQSTSKPKVEILTLCGKVVDMLRPDVQHLLSHLKTDPTSSIYAATHPKLVQQHPS
Length1574
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.08
Grand average of hydropathy-0.032
Instability index44.41
Isoelectric point6.82
Molecular weight174932.41
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15182
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.93|      16|      22|     391|     406|       1
---------------------------------------------------------------------------
  391-  406 (32.24/17.99)	WERAL...RCLR.HALRTTP
  411-  430 (24.69/12.13)	WRRVLlvaPCYRsHSQTSTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.17|      21|      22|     112|     132|       2
---------------------------------------------------------------------------
  112-  132 (36.11/22.42)	VSSAEAPMGQGGSVSVGGPVS
  157-  177 (37.07/23.23)	MNTIGSPTQSGIDQPVGANVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      93.95|      21|      22|    1377|    1397|       3
---------------------------------------------------------------------------
 1377- 1397 (36.65/28.06)	WLSDSSRPVKELNSAVG..YALL
 1401- 1418 (22.05/13.30)	WASQDS.....TSTAIGniVALL
 1429- 1449 (35.25/26.65)	WLESSHTVIKHLRPVTS..VAML
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.56|      16|      22|    1453|    1468|       4
---------------------------------------------------------------------------
 1453- 1468 (29.00/16.55)	FRILGPLLPRLAFARP
 1478- 1493 (28.57/16.18)	FNVLGDVFGKNSQASP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.70|      15|      16|    1153|    1167|       5
---------------------------------------------------------------------------
 1153- 1167 (27.11/14.21)	LGVSTKT..PFSESFAQ
 1169- 1185 (24.58/12.18)	LGSSNSSicPPPEYFAN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.64|      13|      16|     343|     355|       6
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  343-  355 (24.35/13.48)	RFLSQSYPSIAGE
  361-  373 (25.28/14.27)	RYSPITYPSVLGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     298.71|      88|     348|     663|     752|       8
---------------------------------------------------------------------------
  663-  752 (140.84/98.04)	HETYPLSMSLLSGLSIN...LCLKLAFQLEETIFLGQAVPSI...AMVETYV...RLLLITPHSlfRPHF..TTLTQ..........RCPS...ILSKAGVSLL.LLEILNYRLL
  884-  937 (45.05/23.67)	...................................GQAIQAW...QQAETTVinqCNQLLSPSA..EPNYvmTYLSH..........SFPQhrrYLC.AGAWML.M.........
 1003- 1101 (112.82/71.92)	HELVPLDIVLLALIDRDddpYALRLVISLLERPELQHRIKAFcssRSPEHWL...KNQ...P.....PKR..AELQKalgnhlswkdRYPT...FFDDIAARLLpVIPLIIYRLI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.39|      10|      22|     844|     853|       9
---------------------------------------------------------------------------
  844-  853 (18.02/ 7.91)	YLQPLLEQIM
  867-  876 (19.37/ 9.00)	YFPPLIRDFL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.00|      14|      23|    1106|    1120|      10
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 1106- 1120 (19.78/16.33)	TDIADrVLAFYSTFL
 1128- 1141 (26.22/16.48)	TFVRD.ILAYFYGHL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.24|      12|      23|     306|     317|      11
---------------------------------------------------------------------------
  306-  317 (21.94/14.29)	DDALICIIMEIH
  331-  342 (25.30/17.76)	DQHLHCPTFGTH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      85.18|      21|      22|     526|     546|      12
---------------------------------------------------------------------------
  526-  546 (32.58/21.22)	DPRKVETT.RKIISFHKEDKGL
  547-  567 (30.45/19.30)	DPNNISPQ.SILLDFISSSQTL
  568-  588 (22.15/11.83)	RIWSFNTSiREHLNSDQLQKG.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.23|      11|      15|      66|      76|      14
---------------------------------------------------------------------------
   66-   76 (18.94/12.00)	ESVLISFVLQC
   82-   92 (20.29/13.43)	QSQFLLFATQC
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15182 with Med23 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SKSNPADASGGRTNFSKPHASTQAGGNSNTDAQRAFY
1202
1238










Molecular Recognition Features






MoRF SequenceStartStop




NANANA