<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15182

Description Uncharacterized protein
SequenceGDLVSCFLSCGLQIGSDFVRSTVNKLQKRVSAHTRDLPPRDEQFISDFEELCMPFPDQEQLQAVTESVLISFVLQCSSHAPQSQFLLFATQCLCARGHLRWDSLIPSLLSAVSSAEAPMGQGGSVSVGGPVSSSSAIAVPNAPSFHASNPTSPLSAMNTIGSPTQSGIDQPVGANVSPMKAAEFSTLGQPGTTSRGDQSRRGAQVSYLHHLSCRIILAGLESNLKPATHAVIFHHMVNWLVNWDQRPHGVDEADTMQTSRIGRPVHEWMHLCLDVIWILVDEEKCRIPFXXXXXXNLQFLENIPDDDALICIIMEIHRRRDMVCMHMQMLDQHLHCPTFGTHRFLSQSYPSIAGESVANLRYSPITYPSVLGEPLHGEDLANSIPKGGLDWERALRCLRHALRTTPSPDWWRRVLLVAPCYRSHSQTSTPGAVFSPDMIGEAVADRTIELLKLTNSETQCWQDWLLFADIFFFLMKSGCIDFLDFVDKLASRVTNGDQQILCSNHVTWLLAQIIRIEIVTNTLSSDPRKVETTRKIISFHKEDKGLDPNNISPQSILLDFISSSQTLRIWSFNTSIREHLNSDQLQKGKQIDEWWKQMTKASGERMIDFMNLDERAMGMFWVLSFTMAQPACDAVMTWFTSAGGAEFMQGPNMQPNERVTMMHETYPLSMSLLSGLSINLCLKLAFQLEETIFLGQAVPSIAMVETYVRLLLITPHSLFRPHFTTLTQRCPSILSKAGVSLLLLEILNYRLLPLYRYHGKSKALMYDVTKIISMIKGKRGEHRLFRLAENLCMNLILSLRDFFLVKKELKGPTEFTETLNRITIISLAITIKTRGIAEVEHMVYLQPLLEQIMATSQHTWSEKTLRYFPPLIRDFLMVRADKRGQAIQAWQQAETTVINQCNQLLSPSAEPNYVMTYLSHSFPQHRRYLCAGAWMLMNGHPEINSANLARVLREFSPEEVTANIYTMVDVLLHHIQLELQRGHLVQDLLSKAITNLAFFVWTHELVPLDIVLLALIDRDDDPYALRLVISLLERPELQHRIKAFCSSRSPEHWLKNQPPKRAELQKALGNHLSWKDRYPTFFDDIAARLLPVIPLIIYRLIENDATDIADRVLAFYSTFLAFHPLRFTFVRDILAYFYGHLPSKLIVRILNVLGVSTKTPFSESFAQYLGSSNSSICPPPEYFANLLLGLVNNVIPPLSSKSKSNPADASGGRTNFSKPHASTQAGGNSNTDAQRAFYQNQDPGSYTQLVLETAAIEILSLSVPASQIVSSLVQLIAHVQAMLIQSNTGQGMSAGLGQNSGLPTSPSGAGAESAGASRANTSASGISANFVSRSGYSCQQLSVLMIQACGFLLAQLPPEFHMQLYSEAARIIKDCRWLSDSSRPVKELNSAVGYALLDPTWASQDSTSTAIGNIVALLHSFFSNLPQEWLESSHTVIKHLRPVTSVAMLRIAFRILGPLLPRLAFARPLFMKTLALLFNVLGDVFGKNSQASPHVPASEIGDIIDFLHHAVMYEGQGGPVQSTSKPKVEILTLCGKVVDMLRPDVQHLLSHLKTDPTSSIYAATHPKLVQQHPS
Length1574
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.08
Grand average of hydropathy-0.032
Instability index44.41
Isoelectric point6.82
Molecular weight174932.41
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15182
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.93|      16|      22|     391|     406|       1
---------------------------------------------------------------------------
  391-  406 (32.24/17.99)	WERAL...RCLR.HALRTTP
  411-  430 (24.69/12.13)	WRRVLlvaPCYRsHSQTSTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.17|      21|      22|     112|     132|       2
---------------------------------------------------------------------------
  112-  132 (36.11/22.42)	VSSAEAPMGQGGSVSVGGPVS
  157-  177 (37.07/23.23)	MNTIGSPTQSGIDQPVGANVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      93.95|      21|      22|    1377|    1397|       3
---------------------------------------------------------------------------
 1377- 1397 (36.65/28.06)	WLSDSSRPVKELNSAVG..YALL
 1401- 1418 (22.05/13.30)	WASQDS.....TSTAIGniVALL
 1429- 1449 (35.25/26.65)	WLESSHTVIKHLRPVTS..VAML
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.56|      16|      22|    1453|    1468|       4
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 1453- 1468 (29.00/16.55)	FRILGPLLPRLAFARP
 1478- 1493 (28.57/16.18)	FNVLGDVFGKNSQASP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.70|      15|      16|    1153|    1167|       5
---------------------------------------------------------------------------
 1153- 1167 (27.11/14.21)	LGVSTKT..PFSESFAQ
 1169- 1185 (24.58/12.18)	LGSSNSSicPPPEYFAN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.64|      13|      16|     343|     355|       6
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  343-  355 (24.35/13.48)	RFLSQSYPSIAGE
  361-  373 (25.28/14.27)	RYSPITYPSVLGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     298.71|      88|     348|     663|     752|       8
---------------------------------------------------------------------------
  663-  752 (140.84/98.04)	HETYPLSMSLLSGLSIN...LCLKLAFQLEETIFLGQAVPSI...AMVETYV...RLLLITPHSlfRPHF..TTLTQ..........RCPS...ILSKAGVSLL.LLEILNYRLL
  884-  937 (45.05/23.67)	...................................GQAIQAW...QQAETTVinqCNQLLSPSA..EPNYvmTYLSH..........SFPQhrrYLC.AGAWML.M.........
 1003- 1101 (112.82/71.92)	HELVPLDIVLLALIDRDddpYALRLVISLLERPELQHRIKAFcssRSPEHWL...KNQ...P.....PKR..AELQKalgnhlswkdRYPT...FFDDIAARLLpVIPLIIYRLI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.39|      10|      22|     844|     853|       9
---------------------------------------------------------------------------
  844-  853 (18.02/ 7.91)	YLQPLLEQIM
  867-  876 (19.37/ 9.00)	YFPPLIRDFL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.00|      14|      23|    1106|    1120|      10
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 1106- 1120 (19.78/16.33)	TDIADrVLAFYSTFL
 1128- 1141 (26.22/16.48)	TFVRD.ILAYFYGHL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.24|      12|      23|     306|     317|      11
---------------------------------------------------------------------------
  306-  317 (21.94/14.29)	DDALICIIMEIH
  331-  342 (25.30/17.76)	DQHLHCPTFGTH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      85.18|      21|      22|     526|     546|      12
---------------------------------------------------------------------------
  526-  546 (32.58/21.22)	DPRKVETT.RKIISFHKEDKGL
  547-  567 (30.45/19.30)	DPNNISPQ.SILLDFISSSQTL
  568-  588 (22.15/11.83)	RIWSFNTSiREHLNSDQLQKG.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.23|      11|      15|      66|      76|      14
---------------------------------------------------------------------------
   66-   76 (18.94/12.00)	ESVLISFVLQC
   82-   92 (20.29/13.43)	QSQFLLFATQC
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15182 with Med23 domain of Kingdom Viridiplantae
Unable to open file!