<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15176

Description Uncharacterized protein
SequenceACPAISPEFSPSSRASSSEPATRSRNTSTAAGRGITGTPSGPAAMEHRRWGTSGSGSRYSFRTSVSSLADIGGEIVEADQAGGELEASRAAADRVFVAVPGEVKHGKSALQWALQNVAKDGAQVVVAHVHRPAQMIPMMGAKMHYTRLDPEQVKDYRKQELEKASERLDEYVVLCTILKVSCEKIIIEKDDVAKGLEELIALHGITKLVMGAAADKHYSKKMKRPKSKTALRLMEAEASPCMIWFTCKGQLICTREANTTVPVIPASPASTVASTLSASSMSSHRRSITIHQSESEAPSSNGSPQQNLNRSRTEVMRHHSRGAGGTPPQVFEPLELNVNARPTRTPLSSMDSWEEFGRRSQGSWYNLSRNDEVISVSESATQHPMHESDDEHFSSPFPELTPGADAEMYGRLEEALRETQESKKEVFEESTKRRKAELDLLSALQKAKELEKLYHHETRQRKTIEETLVRQTQELEEMKIQCDTIYHQLCDAEEQKAMLEQRITEMESALREIEEKLDTSKYLLDALQADKEELQQERDAAITTAEELRQKGEQRTSMAAEALSTEFSAFELEQATRSFDEALKIGEGGFGCVYKGSLRSTTVAIKLLHPKSLQGQSEFNQEVAVLGRVRHPNLVALIGSCRETFGLVYEFLPNGSLDDRLVCANGTPPLTWQVRTRIIYEMCSALTFLHSNKPHPVVHGDLKPANILLDANLVSKLGDFGVCRLLTQSSTSTATTLYRTSTPKGTFAYMDPEFLSTGELTPRSDVYSLGIIILQLLTGRRPQKIAEAVEDAVEKRELHTVLDPSAGAWPFVQANQLTHLGLRCAEMSRRRRPDLAREVWTVVEPLMKAASLTARRPTFAASSEASPDEASTPSYFVCPIFQEMMSDPHIAADGFTYEAEAIRGWLDSGHDTSPMTNLKLEHRELTPNRGLRSVILEWQQQHRQRYHEDWR
Length951
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.06
Grand average of hydropathy-0.512
Instability index55.93
Isoelectric point6.00
Molecular weight105815.19
Publications
PubMed=23075845

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15176
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     166.10|      49|      50|     399|     447|       1
---------------------------------------------------------------------------
  399-  444 (69.72/41.94)	....ELTPGADAEMYGR..LEEAL.RETQESKKEVFEESTKRRKAELD....LLSAL
  445-  492 (62.19/36.63)	QKAkELEKLYHHETRQRktIEETLvRQTQE.....LEEMKIQCDTIYH....QLCDA
  495-  527 (34.20/16.88)	QKA...............mLEQRI.TEMESALREI.EEK.......LDtskyLLDAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.66|      25|      57|     590|     614|       2
---------------------------------------------------------------------------
  590-  614 (44.91/32.56)	FGCVYK....GSLRSTTVAIKLLHPKSLQ
  645-  673 (42.75/30.60)	FGLVYEflpnGSLDDRLVCANGTPPLTWQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     184.03|      45|      50|     750|     794|       3
---------------------------------------------------------------------------
  694-  742 (47.87/30.47)	..PHPVVHG..DLKPANillDanlVSKLGdFGVCRLLT.QSSTSTATTLYRTST
  750-  794 (72.78/50.61)	MDPEFLSTG..ELTPRS...D...VYSLG.IIILQLLTGRRPQKIAEAVEDAVE
  802-  844 (63.38/43.01)	LDP...SAGawPFVQAN...Q...LTHLG.LRCAEMSRRRRPD.LAREVWTVVE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     199.13|      59|     285|      11|      72|       4
---------------------------------------------------------------------------
   11-   72 (94.54/60.87)	PSSRASSSEPATRSR.NTSTAAGRGITGTPsgPAAMEHRRWGTSGSGSRYSFrTSVSSLADIG
  298-  357 (104.59/57.84)	PSSNGSPQQNLNRSRtEVMRHHSRGAGGTP..PQVFEPLELNVNARPTRTPL.SSMDSWEEFG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15176 with Med32 domain of Kingdom Viridiplantae
Unable to open file!