<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15172

Description Uncharacterized protein
SequenceMSSHRRSITIHQSESEAPSSNGSPQQNLNRSRTEVMRHHSRGAGGTPPQVFEPLELNVNARPTRTPLSSMDSWEEFGRRSQGSWYNLSRNDEVISVSESATQHPMHESDDEHFSSPFPELTPGADAEMYGRLEEALRETQESKKEVFEESTKRRKAELDLLSALQKAKELEKLYHHETRQRKTIEETLVRQTQELEEMKIQCDTIYHQLCDAEEQKAMLEQRITEMESALREIEEKLDTSKYLLDALQADKEELQQERDAAITTAEELRQKGEQRTSMAAEALSTEFSAFELEQATRSFDEALKIGEGGFGCVYKGSLRSTTVAIKLLHPKSLQGQSEFNQEVAVLGRVRHPNLVALIGSCRETFGLVYEFLPNGSLDDRLVCANGTPPLTWQVRTRIIYEMCSALTFLHSNKPHPVVHGDLKPANILLDANLVSKLGDFGVCRLLTQSSTSTATTLYRTSTPKGTFAYMDPEFLSTGELTPRSDVYSLGIIILQLLTGRRPQKIAEAVEDAVEKRELHTVLDPSAGAWPFVQANQLTHLGLRCAEMSRRRRPDLAREVWTVVEPLMKAASLTARRPTFAASSEASPDEASTPSYFVCPIFQEMMSDPHIAADGFTYEAEAIRGWLDSGHDTSPMTNLKLEHRELTPNRGLRSVILEWQQQHRQRYHEDWR
Length671
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.06
Grand average of hydropathy-0.618
Instability index57.04
Isoelectric point5.52
Molecular weight75909.30
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15172
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.66|      25|      57|     310|     334|       1
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  310-  334 (44.91/37.95)	FGCVYK....GSLRSTTVAIKLLHPKSLQ
  365-  393 (42.75/35.71)	FGLVYEflpnGSLDDRLVCANGTPPLTWQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     180.07|      49|      50|     119|     167|       2
---------------------------------------------------------------------------
  119-  167 (80.12/40.83)	ELTPGADA.EMYGR..LEEAL.RETQESKKEVFEESTKRRKAELDLLSA....LQKA
  169-  203 (44.85/20.23)	ELEKLYHH.ETRQRktIEETLvRQTQE.....LEE...........MK.....IQCD
  208-  256 (55.11/26.22)	QLC...DAeEQKAM..LEQRI.TEMESALREI.EEKLDTSKYLLDALQAdkeeLQQ.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     184.03|      45|      49|     470|     514|       3
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  414-  462 (47.87/30.14)	..PHPVVHG..DLKPANillDanlVSKLGdFGVCRLLT.QSSTSTATTLYRTST
  470-  514 (72.78/49.96)	MDPEFLSTG..ELTPRS...D...VYSLG.IIILQLLTGRRPQKIAEAVEDAVE
  522-  564 (63.38/42.48)	LDP...SAGawPFVQAN...Q...LTHLG.LRCAEMSRRRRPD.LAREVWTVVE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.21|      25|      57|      20|      47|       4
---------------------------------------------------------------------------
   20-   47 (33.78/35.15)	SNGSpQQNLNRSrTEVMrHHSRGAGGTP
   80-  104 (46.42/29.65)	SQGS.WYNLSRN.DEVI.SVSESATQHP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15172 with Med32 domain of Kingdom Viridiplantae
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