<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15171

Description Uncharacterized protein
SequenceLSRTRGRLTSSRGALINTNSACPAISPEFSPSSRASSSEPATRSRNTSTAAGRGITGTPSGPAAMEHRRWGTSGSGSRYSFRTSVSSLADIGGEIVEADQAGGELEASRAAADRVFVAVPGEVKHGKSALQWALQNVAKDGAQVVVAHVHRPAQMIPMMGAKMHYTRLDPEQVKDYRKQELEKASERLDEYVVLCTILKVSCEKIIIEKDDVAKGLEELIALHGITKLVMGAAADKHYSKKMKRPKSKTALRLMEAEASPCMIWFTCKGQLICTREANTTVPVIPASPASTVASTLSASSMSSHRRSITIHQSESEAPSSNGSPQQNLNRSRTEVMRHHSRGAGGTPPQVFEPLELNVNARPTRTPLSSMDSWEEFGRRSQGSWYNLSRNDEVISVSESATQHPMHESDDEHFSSPFPELETPGADAEMYGRLEEALRETQESKKEVFEESTKRRKAELDLLSALQKAKELEKLYHHETRQRKTIEETLVRQTQELEEMKIQCDTIYHQLCDAEEQKAMLEQRITEMESALREIEEKLDTSKYLLDALQADKEELQQERDAAITTAEELRQKGEQRTSMAAEALSTEFSAFELEQATRSFDEALKIGEGGFGCVYKGSLRSTTVAIKLLHPKSLQGQSEFNQEVAVLGRVRHPNLVALIGSCRETFGLVYEFLPNGSLDDRLVCANGTPPLTWQVRTRIIYEMCSALTFLHSNKPHPVVHGDLKPANILLDANLVSKLGDFGVCRLLTQSSTSTATTLYRTSTPKGTFAYMDPEFLSTGELTPRSDVYSLGIIILQLLTGRRPQKIAEAVEDAVEKRELHTVLDPSAGAWPFVQANQLTHLGLRCAEMSRRRRPDLAREVWTVVEPLMKAASLTARRPTFAASSEASPDEASTPSYFVCPIFQEMMSDPHIAADGFTYEAEAIRGWLDSGHDTSPMTNLKLEHRELTPNRGLRSVILEWQQQHRQRYHEDWR
Length972
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.06
Grand average of hydropathy-0.518
Instability index55.03
Isoelectric point6.14
Molecular weight108086.68
Publications
PubMed=23075845

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15171
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.01|      25|      48|     790|     815|       1
---------------------------------------------------------------------------
  790-  815 (36.20/26.08)	LGIIILQLLTGRRPQkIAEAVEDAVE
  841-  865 (44.81/28.16)	LGLRCAEMSRRRRPD.LAREVWTVVE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.66|      25|      57|     611|     635|       2
---------------------------------------------------------------------------
  611-  635 (44.91/28.22)	FGCVYK....GSLRSTTVAIKLLHPKSLQ
  666-  694 (42.75/26.52)	FGLVYEflpnGSLDDRLVCANGTPPLTWQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     157.03|      47|      51|     433|     483|       3
---------------------------------------------------------------------------
  433-  481 (73.68/64.16)	LEEAL.RETQESKKEVFEESTKRRKAELD....LLSAL..QKAKelEKLYH.........HETRQ
  485-  518 (34.88/21.93)	IEETLvRQTQE.....LEEMKIQCDTIYH....QLCDAeeQKA......................
  520-  571 (48.47/32.32)	LEQRI.TEMESALREI.EE.......KLDtskyLLDAL..QADK..EELQQerdaaittaEELRQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     163.40|      51|      57|     322|     378|       4
---------------------------------------------------------------------------
  322-  378 (69.75/65.45)	GSpQQNLNRSrTEVMrHHSRGAGGTPPQVFEPLELNVNARPTRTPlsSMDSwEEFGR
  382-  432 (93.65/57.26)	GS.WYNLSRN.DEVI.SVSESATQHPMHESDDEHFSSPFPELETP..GADA.EMYGR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     142.00|      42|     703|      42|      87|       6
---------------------------------------------------------------------------
   42-   87 (67.07/49.08)	TRSrNTSTAAGRGITGTPSGPAAMEHRRWGTSGsgsRYSFRTSVSS
  748-  789 (74.93/42.94)	TQS.STSTATTLYRTSTPKGTFAYMDPEFLSTG...ELTPRSDVYS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15171 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LSRNDEVISVSESATQHPMHESDDEHFSSPFPELETPGADAEMYGRLEEALRETQESKKEVFEEST
2) NSACPAISPEFSPSSRASSSEPATRSRNTSTAAGRGITGTPSGPAAMEHRRWGTSGSGS
3) SMSSHRRSITIHQSESEAPSSNGSPQQNLNRSRTEVMRHHSRGAGGTPPQVFEPLELNVNARPTRTPLSSMDSW
387
19
300
452
77
373










Molecular Recognition Features






MoRF SequenceStartStop




NANANA