<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15154

Description Uncharacterized protein
SequencePPRPSPMASGAPPPSVAVAVRPGGSASRRAARWAAASLLGDDSAGPAVSIAFVHVIPALAFVPSPSGERMPVAQVEREVAEAYTRDRHALVQEALLPFRLLAKANVSVETVVVEGDGVAETLVRYAAESGVRSLVLGSGSFRWFHRVMGSPDVPTAVLKTTQNSCNVFVVCKRRLIVKVAGHPQADCNLLFFAVSGTNLSIQSITHKAFAETQMSLLFDSSTEAETLSVSSCSQARCSYSASSDASAGSESSVLVHIISGDAVQAGTDVNQSYGSHSLLKKVSYAASNSSDECQSIDEVEKLRKELKETLVMYDKACDDLVHAKKKIQVLSDECSEEARKVENALRKEKILKQVAAHEKAKHLEAIKEVEQAKRSFTREAYSKHKAEMVGSIISLDKEKIVDAILSTSKNCRRYSKHEIELATDNFSKARKIGEGGYGNVYRCTLDHIEVAVKSIQQDSTDKTDEFLKEVEILSQLHHPNLVLLIGFCPEIGCLVYEYLENGSLEDQLLDKKRHEPLHWFLRFRIIFEVSCGLAFLHGRKPEPIVHRDLKPANILLDKNYVGKIGDAGFAKLISDPVPDWQTEYTDTIIAGTMHYMDPEYQQTGTVRPKSDLFGLGVIILQMLTGKRPSGLIASVENAVKSRSLQYILDKSQTDWPVAEAEMLAKLGLRCTALKCRDRPDLESEVLPELEEILHRAASIVNKRSLNSRAPTHFICPITQGLMDDPYVAADGHTYEHHAIEDWLRKHSVSPITRCKLSNLSIIPNHSLHAAIQQWKKSQPAQTFNNP
Length786
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.06
Grand average of hydropathy-0.235
Instability index48.57
Isoelectric point6.78
Molecular weight86581.78
Publications
PubMed=23075845

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15154
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     100.77|      27|      42|     290|     316|       1
---------------------------------------------------------------------------
  290-  316 (47.32/34.59)	SDECQSIDEVEK....LRKE..LKETLVMYDKA
  331-  360 (29.49/18.72)	SDECS..EEARKvenaLRKEkiLKQ.VAAHEKA
  362-  383 (23.95/13.79)	..HLEAIKEVEQ....AKRS..F..TREAYSK.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.89|      26|      49|     481|     511|       2
---------------------------------------------------------------------------
  481-  511 (35.79/40.53)	LVLLIGFCPEIgcLVYEYLENGSLedqLLDK
  533-  558 (47.11/32.40)	LAFLHGRKPEP..IVHRDLKPANI...LLDK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.50|      24|     219|      25|      48|       5
---------------------------------------------------------------------------
   25-   48 (42.44/29.91)	SASRRAARWAAASLL.....GDD.SAGPAV
  240-  269 (30.06/18.86)	SASSDASAGSESSVLvhiisGDAvQAGTDV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15154 with Med32 domain of Kingdom Viridiplantae
Unable to open file!