<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15133

Description Uncharacterized protein
SequenceMMMMIHNKWQPVAQPAASESSHRPHMRGQMRPLHAVPVPAAAAAVPPQASPSTTSLPVRPPQAQAQNMQINHKPSQQHPMAPVAQLRPCHPNAAAQIQAQPLSRHNNSTRMQQPVGFNHQAHMPLNAAAVPRTASTNWLPPTNTDQVQNMGINPMAGAQVQIQSMARHNSSGMRTQPPHTMSPRMNQEDFRVNQRQIYQAHGRRQSNVAASQIVGHFGGQNNQQFGHHPVEVDWREDMFQRITSLKRAHFSELVEFQRALRACAPDAMKDQFDKHEAFIYDIVRWCSLIKLRNAGKNVGLQLPSPQVVHITGATDCQQKLQEQPAAETLSSQSSENVPAATSPLVQQQENSHQLAGEEAVDDVVRREAEVPVVTNLTGGSTAPLTGGSGTCSQEKQQEHHPAHEAIPQLMQNANPAETPPAQQQTKRSLSPAELRSLAREMGVNLKRAFRHMRTPAGSIDDGDCMWFDEPSSVESCNKRRKTHDGALQDEITAAYSMLVETEIRITDDDHAGGADGAVVIELCYIPVSLTPELRAVVDPSEMSTKLLVPADYPRSSPVLLEDDDEQRKGIAAGVLDVEFRHAIGQLLEPRSIEGIAKAWDACVRRAVVQFAHGLGGGTFSTRHGRWESCIGATT
Length634
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.04
Grand average of hydropathy-0.572
Instability index64.43
Isoelectric point6.65
Molecular weight69591.52
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15133
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     331.75|      73|      74|     298|     370|       1
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  139-  208 (87.12/37.83)	....LPptnTDQVQ.NMGINPM.A.GAQVQI.QSMA....RHNSSGMRTQP.PHTMSPRMNQEDfrvN.........Q......RQIYQAHG......R.......RQSNV
  210-  296 (60.94/24.48)	.........ASQIVgHFGGQNN....QQFGH.HPVEvdwrEDMFQRITSLK.RAHFSELVEFQR...AlracapdamK......DQFDKHEAfIYDIVRwcsliklRNAGK
  298-  370 (118.18/53.67)	VGLQLP...SPQVV.HITGATD.C.QQKLQE.QPAA....ETLSSQSSENV.PAATSPLVQQQE...N.........S......HQLAGEEA.VDDVVR.......REAEV
  372-  444 (65.51/26.81)	VVTNLT...GGSTA.PLTGGSGtCsQEKQQEhHPAH....EAIP.QLMQNAnPAETPPAQQQTK...R.........SlspaelRSLAREMG.VN................
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      97.19|      24|      25|      37|      60|       2
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   29-   56 (36.74/13.76)	QMRPlhavPV.PAAAAAV.....PPQASPSTTSL
   57-   84 (28.72/ 9.31)	PVRP......pQAQAQNMqinhkPSQQHPMAPVA
   85-  111 (31.73/10.98)	QLRP.chpNA.AAQIQAQ.....PLSRHNNSTRM
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15133 with Med15 domain of Kingdom Viridiplantae
Unable to open file!