<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15126

Description Uncharacterized protein
SequenceMMMMIHNKWQPVAQPAASESSHRPHMRGQMRPLHAVPVPAAAAAVPPQASPSTTSLPVRPPQAQAQNMQINHKPSQQHPMAPVAQLRPCHPNAAAQIQAQPLSRHNNSTRMQQPVGFNHQAHMPLNAAAVPRTASTNWLPPSSRKTAVQCRRFADCWAFRRTEQPAIWAPSSRSGLEGRHVSEDHIPQTRPLLGARGISASTTSMRPSDAMKDQFDKHEAFIYDIVRWCSLIKLRNAGKNVGLQLPSPQVVHITGATDCQQKLQEQPAAETLSSQSSENVPAATSPLVQQQENSHQLAGEEAVDDVVRREAEVPVVTNLTGGSTAPLTGGSGTCSQEKQQEHHPAHEAIPQLMQNANPAETPPAQQQTKRSLSPAELRSLAREMGVNLKRAFRHMRTPAGSIDDGDCMWFDEPSSVESCNKRRKTHDGALQDEITAAYSMLVETEIRITDDDHAGGADGAVVIELCYIPVSLTPELRAVVDPSEMSTKLLVPADYPRSSPVLLEDDDEQRKGIAAGVLDVEFRHAIGQLLEPRSIEGIAKAWDACVRRAVVQFAHGLGGGTFSTRHGRWESCIGAT
Length576
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.04
Grand average of hydropathy-0.521
Instability index71.03
Isoelectric point6.78
Molecular weight62748.02
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15126
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     162.31|      24|      25|      37|      60|       1
---------------------------------------------------------------------------
   11-   32 (37.52/15.01)	PV.AQPAAS.....ESSHRPHMRG.QMRP
   37-   60 (42.44/17.89)	PVPAAAAAV.....PPQASPSTTSLPVRP
   62-   88 (24.52/ 7.40)	..QAQAQNMqinhkPSQQHPMAPVAQLRP
   91-  114 (32.74/12.21)	PNAAAQIQA.....QPLSRHNNSTRMQQP
  122-  140 (25.09/ 7.74)	HMPLNAAAV.....PRTA..STNWLP...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     246.40|      73|      74|     241|     313|       2
---------------------------------------------------------------------------
  155-  227 (38.13/12.34)	.......................D.C.WAfRRTE.QPAIWAPSSRSglegrhvSEDhI.P.QTRPLLgargisasttsmrpsdamKDQFDK......H.....EAfIYDIVR
  235-  308 (125.07/54.06)	RNAGKnVGLQLPSPQVVHITGATD.C.QQ.KLQE.QPAAETLSSQS.......SEN.V.PAATSPLV..................QQQENS......HQLAGEEA.VDDVVR
  309-  387 (83.21/33.97)	REAEVpVVTNLTGGSTAPLTGGSGtCsQE.KQQEhHPAHEAIP.QL.......MQN.AnPAETPPAQ..................QQTKRSlspaelRSLAREMG.VN....
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15126 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ITGATDCQQKLQEQPAAETLSSQSSENVPAATSPLVQQQENSHQLAGEEAVDDVVRREAEVPVVTNLTGGSTAPLTGGSGTCSQEKQQEHHPAHEAIPQLMQNANPAETPPAQQQTKRSLSPAELRSL
2) MMIHNKWQPVAQPAASESSHRPHMRGQMRPLHAVPVPAAAAAVPPQASPSTTSLPVRPPQAQAQNMQINHKPSQQHPMAPVAQLRPCHPNAAAQIQAQPLSRHNNSTRMQQPVGFNHQAHMPLNAAAVPRTASTNWLPPSSR
3) WAPSSRSGLEGRHVSEDHIPQTRPLLGARGISASTTSMRPSDAMKD
253
3
168
380
144
213










Molecular Recognition Features






MoRF SequenceStartStop




1) HRPHMRGQMRPLHAVPVPAAAAAV
2) MMIHNK
22
3
45
8