<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15123

Description Uncharacterized protein
SequenceVPAAAAAVPPQASPSTTSLPVRPPQAQAQNMQINHKPSQQHPMAPVAQLRPCHPNAAAQIQAQPLSRHNNSTRMQQPVGFNHQAHMPLNAAAVPRTASTNWLPPTNTDQVQNMGINPMAGAQVQIQSMARHNSSGMRTQPPHTMSPRMNQEDFRVNQRQIYQAHGRRQSNVAASQIVGHFGGQNNQQFGHHPVEVDWREDMFQRITSLKRAHFSELVEFQRALRACAPDAMKDQFDKHEAFIYDIVRWCSLIKLRNAGKNVGLQLPSPQVVHITGATDCQQKLQEQPAAETLSSQSSENVPAATSPLVQQQENSHQLAGEEAVDDVVRREAEVPVVTNLTGGSTAPLTGGSGTCSQEKQQEHHPAHEAIPQLMQNANPAETPPAQQQTKRSLSPAELRSLAREMGVNLKRAFRHMRTPAGSIDDGDCMWFDEPSSVESCNKRRKTHDGALQDEITAAYSMLVETEIRITDDDHAGGADGAVVIELCYIPVSLTPELRAVVDPSEMSTKLLVPADYPRSSPVLLEDDDEQRKGIAAGVLDVEFRHAIGQLLEPRSIEGIAKAWDACVRRAVVQFAHGLGGGTFSTRHGRWESCIGATHLILSVWTTMVGSCIIHCHELKHTLSYDLMFPCPLCISLSRATSF
Length641
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.05
Grand average of hydropathy-0.476
Instability index62.15
Isoelectric point6.43
Molecular weight70319.43
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15123
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     120.26|      25|      25|       9|      33|       1
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    9-   33 (48.73/24.68)	PPQAS..PSTTSLPVRP..PQA..QAQNMQI
   37-   60 (34.91/15.67)	PSQQH..PMAPVAQLRPchPNA..AA...QI
   87-  115 (36.63/16.79)	PLNAAavPRTASTNWLP..PTNtdQVQNMGI
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     313.23|      78|      80|     280|     359|       2
---------------------------------------------------------------------------
  122-  203 (90.71/47.52)	Q...VQIQSMARHNSSGMRTQP.PHTMSPRMNQEDfrvNQ......RQIYQAHG......R.......RQSNV.........AASQIVGHFG..GQNNQqfghhpvevdwredmFQ
  204-  281 (79.63/40.82)	RitsLKRAHFSELVEFQRA..L.RACAPDAMKDQF...DK......H.....EAfIYDIVRwcsliklRNAGKNVGLQLPSPQVVHITGATD.....................cQQ
  282-  359 (112.28/66.43)	K...LQEQPAAETLSSQSSENV.PAATSPLVQQQE...NS......HQLAGEEA.VDDVVR.......REAEVPVVTNLTGGSTAPLTGGSGtcSQEKQ.................
  361-  407 (30.61/10.68)	.....EHHPAHEAIP.QLMQNAnPAETPPAQQQTK...RSlspaelRSLAREMG.VN...........................................................
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15123 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) TGATDCQQKLQEQPAAETLSSQSSENVPAATSPLVQQQENSHQLAGEEAVDDVVRREAEVPVVTNLTGGSTAPLTGGSGTCSQEKQQEHHPAHEAIPQLMQNANPAETPPAQQQTKRSLSPAELRSL
2) VPAAAAAVPPQASPSTTSLPVRPPQAQAQNMQINHKPSQQHPMAPVAQLRPCHPNAAAQIQAQPLSRHNNSTRMQQPVGFNHQAHMPLNAAAVPRTASTNWLPPTNTDQVQNMGINPMAGAQVQIQSMARHNSSGMRTQPPHTMSPRMNQEDFRVNQRQIYQAHGRRQ
274
1
400
168










Molecular Recognition Features






MoRF SequenceStartStop




NANANA