<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15122

Description Uncharacterized protein
SequenceMMMMIHNKWQPVAQPAASESSHRPHMRGQMRPLHAVPVPAAAAAVPPQASPSTTSLPVRPPQAQAQNMQINHKPSQQHPMAPVAQLRPCHPNAAAQIQAQPLSRHNNSTRMQQPVGFNHQAHMPLNAAAVPRTASTNWLPPTNTDQVQNMGINPMAGAQVQIQSMARHNSSGMRTQPPHTMSPRMNQEDFRVNQRQIYQAHGRRQSNVAASQIVGHFGGQNNQQFGHHPVEVDWREDMFQRITSLKRAHFSELVEFQRALRACAPKEQADKHQKVVDAMAKIGDALSFLQLQKGNIPDAMKDQFDKHEAFIYDIVRWCSLIKLRNAGKNVGLQLPSPQVVHITGATDCQQKLQEQPAAETLSSQSSENVPAATSPLVQQQENSHQLAGEEAVDDVVRREAEVPVVTNLTGGSTAPLTGGSGTCSQEKQQEHHPAHEAIPQLMQNANPAETPPAQQQTKRSLSPAELRSLAREMGVNLKRAFRHMRTPAGSIDDGDCMWFDEPSSVESCNKRRKTHDGALQDEITAAYSMLVETEIRITDDDHAGGADGAVVIELCYIPVSLTPELRAVVDPSEMSTKLLVPADYPRSSPVLLEDDDEQRKGIAAGVLDVEFRHAIGQLLEPRSIEGIAKAWDACVRRAVVQFAHGLGGGTFSTRHGRWESCIGAT
Length665
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.04
Grand average of hydropathy-0.569
Instability index62.97
Isoelectric point6.77
Molecular weight72994.44
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15122
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     345.62|      73|      74|     330|     402|       1
---------------------------------------------------------------------------
  139-  208 (91.08/42.32)	..........LPptnTDQVQNMGINPM.A.GAQVQI.QSMARHNSSGMRTQP.PHTMSPRMNQEDfrvNQ......RQIYQAHG.....R.......RQSNV
  254-  327 (72.09/32.01)	VEFQralracAP...KEQADKHQKVVD.A.MAKIGD...ALSFLQLQKG.NI.PDA....MKDQF...DK......H....EAFIYDIVRwcsliklRNAG.
  330-  402 (117.81/56.81)	VGLQ......LP...SPQVVHITGATD.C.QQKLQE.QPAAETLSSQSSENV.PAATSPLVQQQE...NS......HQLAGEEAVDDVVR.......REAEV
  404-  476 (64.63/27.96)	VVTN......LT...GGSTAPLTGGSGtCsQEKQQEhHPAHEAIP.QLMQNAnPAETPPAQQQTK...RSlspaelRSLAREMGVN................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      97.19|      24|      25|      37|      60|       2
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   29-   56 (36.74/19.72)	QMRPlhavPV.PAAAAAV.....PPQASPSTTSL
   57-   84 (28.72/13.36)	PVRP......pQAQAQNMqinhkPSQQHPMAPVA
   85-  111 (31.73/15.75)	QLRP.chpNA.AAQIQAQ.....PLSRHNNSTRM
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15122 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MMIHNKWQPVAQPAASESSHRPHMRGQMRPLHAVPVPAAAAAVPPQASPSTTSLPVRPPQAQAQNMQINHKPSQQHPMAPVAQLRPCHPNAAAQIQAQPLSRHNNSTRMQQPVGFNHQAHMPLNAAAVPRTASTNWLPPTNTDQVQNMGINPMAGAQVQIQSMARHNSSGMRTQPPHTMSPRMNQEDFRVNQRQIYQAHGRRQ
2) TGATDCQQKLQEQPAAETLSSQSSENVPAATSPLVQQQENSHQLAGEEAVDDVVRREAEVPVVTNLTGGSTAPLTGGSGTCSQEKQQEHHPAHEAIPQLMQNANPAETPPAQQQTKRSLSPAELRSL
3
343
205
469










Molecular Recognition Features






MoRF SequenceStartStop




1) HRPHMRGQMRPLHAVPVPAAAAA
2) MMIHNK
22
3
44
8