<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15086

Description Uncharacterized protein
SequenceRDLTNQHTTKMNSNDWRPTQGSNPRAGVDPPPTGGPGDWRAQLLPDERSRNVDWILETLQRHLPVSHPDGLNELQKIAVRIEQRICDAATNQSDYCWDISLKILSMMMPTQQALGNTKVIPNQYNLAPALSTQGSNQAHTSAIPLMSRQQAWQPNTSTFVQASSLTSIGQNLAGVNQISTAHNMSVMPHRTINNGLAQGTSQDIYPAQRQMAGRQQQQESQQFTYHQHQQPFPQSQQPNIYLQQHKQQLMGQKPNLQQNQVIGQWDYAAEMHQQQRLPVQSYNFVNVQQTKQMLNHQYMPLHQSQQRGSQANMSSLQQHQQNQKHQQLLGTAPNVLNMQWMHMPQIKAQQPQEQQHAQQQPMGLMQPQSQHNHLQQSPQHLMSQCVAQPNQLQEHLGMQPQSSVQQKFQTSGGMLLQQNNMHQIQAQMGLQEISSSTSADSTAQTGREGADDYWQEEIYQMVKVLKDQYFAEIGELYNKISLKIQYVDNIIPSQMPSEKYDRIKSFKIILNRILQMLQISKSAIQPSMRDRVPQYEKQIIAILNSQRKTLHPQIQR
Length556
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.05
Grand average of hydropathy-0.875
Instability index67.44
Isoelectric point9.14
Molecular weight63680.92
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15086
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     508.04|      77|      77|     226|     302|       1
---------------------------------------------------------------------------
   60-  129 (68.87/19.25)	...QRHL....PVSHPDGL.nELQKIA.....VRIEQRICDAAT.NQSDYCWDISLKilsmmMPT...........QQAL..........GNTKVIPN.QYnLAPA
  139-  226 (84.27/25.03)	HTSAIPL.msrQQAWQPNTstFVQASS.....LTSIGQ..NLAGvNQISTAHNMSVM.....PHRtinnglaqgtsQDIYPAQR.QMAGRQQQQESQQFTY....H
  227-  302 (135.43/44.21)	.QHQQPF....PQSQQPNI..YLQQHK.....QQLMGQKPNLQQ.NQVIGQWDYAAE.....MHQ...........QQRLPVQSYNFVNVQQTKQMLNHQY.MPLH
  304-  355 (59.77/15.84)	..SQQ.......RGSQANM.sSLQQHQqnqkhQQLLGTAPNVLN.....MQW.........................MHMP.Q....IKAQQPQEQ.........Q
  356-  401 (69.54/19.51)	HAQQQPMglmqPQSQH.N...HLQQSP.....QHLMS.........QCV......AQ.......................P............NQLQEHLG.MQPQ
  402-  470 (90.16/27.24)	SSVQQKF....QTS..GGM..LLQQNN.....MHQIQAQMGLQE....ISSSTSADS.....TAQ...........TGREGADDYWQEEIYQMVKVLKDQY.F...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.51|      18|      21|     475|     495|       2
---------------------------------------------------------------------------
  475-  495 (23.88/30.25)	ELYNKI.SLKIqyVDNIIPsQM
  498-  516 (28.63/20.11)	EKYDRIkSFKI..ILNRIL.QM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.65|      15|      17|     518|     534|       3
---------------------------------------------------------------------------
  518-  534 (23.55/16.11)	QIskSAIQPSMRDRV.PQ
  538-  553 (22.10/ 9.39)	QI..IAILNSQRKTLhPQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15086 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HNMSVMPHRTINNGLAQGTSQDIYPAQRQMAGRQQQQESQQFTYHQHQQPFPQSQQPNIYLQQHKQQLMGQKPN
2) MLNHQYMPLHQSQQRGSQANMSSLQQHQQNQKHQQLLGTAPNV
3) QWMHMPQIKAQQPQEQQHAQQQPMGLMQPQSQHNHLQQSPQHLMSQCVAQPNQLQEHLGMQPQSSVQ
4) RDLTNQHTTKMNSNDWRPTQGSNPRAGVDPPPTGGPGDWRAQLL
182
293
339
1
255
335
405
44










Molecular Recognition Features






MoRF SequenceStartStop




NANANA