<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15085

Description Uncharacterized protein
SequenceMMMPTQQALGNTKVIPNQYNLAPALSTQGSNQAHTSAIPLMSRQQAWQPNTSTFVQASSLTSIGQNLAGVNQISTAHNMSVMPHRTINNGLAQGTSQDIYPAQRQMAGRQQQQESQQFTYHQHQQPFPQSQQPNIYLQQHKQQLMGQKPNLQQNQVIGQWDYAAEMHQQQRLPVQSYNFVNVQQTKQMLNHQYMPLHQSQQRGSQANMSSLQQHQQNQKHQQLLGTAPNVLNMQWMHMPQIKAQQPQEQQHAQQQPMGLMQPQSQHNHLQQSPQHLMSQCVAQPNQLQEHLGMQPQSSVQQKFQTSGGMLLQQNNMHQIQAQMGLQEISSSTSADSTAQTGREGADDYWQEEIYQMVKVLKDQYFAEIGELYNKISLKIQYVDNIIPSQMPSEKYDRIKSFKIILNRILQMLQISKSAIQPSMRDRVPQYEKQIIAILNSQRKTLHPQIQR
Length451
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.06
Grand average of hydropathy-0.869
Instability index72.91
Isoelectric point9.48
Molecular weight51774.82
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15085
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     435.13|      77|      77|     121|     197|       1
---------------------------------------------------------------------------
   44-  127 (85.86/24.99)	QQAWQPNTstFVQASS.....LTSIGQ..NLAGvNQISTAHNMSVMPHRtinnglaqgtsQDIYPAQR.QMAGRQQqqeSQQFTYH.......Q.HQQPF
  128-  201 (124.50/39.54)	PQSQQPNI..YLQQHK.....QQLMGQKPNLQQ.NQVIGQWDYAAEMHQ...........QQRLPVQSYNFVNVQQ...TKQMLNHQYMPLH..qSQQ..
  202-  257 (70.97/19.38)	.RGSQANM.sSLQQHQqnqkhQQLLGTAPNVLN.....MQW....................MHMP.Q....IKAQQ...PQEQ........QHA.QQQPM
  262-  303 (75.10/20.94)	PQSQH.N...HLQQSP.....QHLMS.........QCV......AQ..................P...............NQLQEHLGMQPQSS.VQQKF
  304-  365 (78.71/22.30)	QTS..GGM..LLQQNN.....MHQIQAQMGLQE....ISSSTSADSTAQ...........TGREGADDYWQEEIYQ...MVKVLKDQYF...........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.25|      18|      22|     370|     390|       2
---------------------------------------------------------------------------
  370-  390 (23.17/28.39)	ELYNKI.SLKIqYVDNIIpsQM
  393-  411 (28.08/18.72)	EKYDRIkSFKI.ILNRIL..QM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.65|      15|      17|     413|     429|       3
---------------------------------------------------------------------------
  413-  429 (23.55/18.27)	QIskSAIQPSMRDRV.PQ
  433-  448 (22.10/10.76)	QI..IAILNSQRKTLhPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      28.91|       9|      22|       6|      16|       4
---------------------------------------------------------------------------
    6-   16 (11.78/13.44)	QQAlgNTKVIP
   31-   39 (17.13/10.15)	NQA..HTSAIP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15085 with Med15 domain of Kingdom Viridiplantae
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