<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15083

Description Uncharacterized protein
SequenceMSRQQAWQPNTSTFVQASSLTSIGQNLAGVNQISTAHNMSVMPHRTINNGLAQGTSQDIYPAQRQMAGRQQQQESQQFTYHQHQQPFPQSQQPNIYLQQHKQQLMGQKPNLQQNQVIGQWDYAAEMHQQQRLPVQSYNFVNVQQTKQMLNHQYMPLHQSQQRGSQANMSSLQQHQQNQKHQQLLGTAPNVLNMQWMHMPQIKAQQPQEQQHAQQQPMGLMQPQSQHNHLQQSPQHLMSQCVAQPNQLQEHLGMQPQSSVQQKFQTSGGMLLQQNNMHQIQAQMGLQEISSSTSADSTAQTGREGADDYWQEEIYQMVKVLKDQYFAEIGELYNKISLKIQYVDNIIPSQMPSEKYDRIKSFKIILNRILQMLQISKSAIQPSMRDRVPQYEKQIIAILNSQRKTLHPQIQR
Length411
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.06
Grand average of hydropathy-0.932
Instability index78.77
Isoelectric point9.44
Molecular weight47554.01
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15083
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.31|      12|      15|     306|     320|       2
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  306-  319 (18.83/15.18)	DDYWQE..EIYQmvKV
  322-  335 (17.47/ 7.52)	DQYFAEigELYN..KI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      91.23|      26|      28|     126|     152|       5
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   98-  139 (25.92/ 8.35)	...QQHKQQLMGQkpnlqqnqvigqwdyaaeMHQ.QQRLPVQSyNF
  140-  168 (35.90/ 9.76)	VNVQQTKQMLNHQ...............ympLHQsQQR.GSQA.NM
  169-  200 (29.41/ 6.52)	SSLQQHQQNQKHQ.......qllgtapnvlnM.Q.WMHMP.Q....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.72|      12|      16|     378|     389|       6
---------------------------------------------------------------------------
  378-  389 (23.42/13.10)	AIQPSMRDRV.PQ
  396-  408 (15.31/ 6.28)	AILNSQRKTLhPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.87|      17|      32|     221|     237|       8
---------------------------------------------------------------------------
  221-  237 (34.09/14.33)	QPQSQ.HNHLQQSPQHLM
  254-  271 (25.78/ 8.97)	QPQSSvQQKFQTSGGMLL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.22|      16|      16|      43|      58|       9
---------------------------------------------------------------------------
   43-   58 (28.54/13.37)	P.HRTINNGLAQGTSQD
   61-   77 (24.68/10.48)	PaQRQMAGRQQQQESQQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15083 with Med15 domain of Kingdom Viridiplantae
Unable to open file!