<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15082

Description Uncharacterized protein
SequenceFMQASGGQLLGRSAPSPGTAGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTPQQQRQKLMQASQQQQQQLRPSAAGMLAQSSVPQLQDLQGQAQQKVSGQQQMQYSQAQALSQFQNRQMQARMQPGMSQSQLNQGNQLRSHLGQFTGAANSAMFTAAQASSNSQMMANIPGTMQTMQSQSMMPQMQAVWFDWWASSEESSNDDRPNVQYGRRKYHEHDGNANATATAAAAAARAIWEHARRRSEPAAAGHGGPSEPAAAGHGGPSEPAAEPDAKPDAKPAAESDAEPELLPAEAAKPAMIHSSGLTNRVLPKRDTVPGQSRGSIGWTMLPLTTHRFVGFSLCAVMTTGYQRFTIGFACVQWLCTFKWS
Length373
PositionHead
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.06
Grand average of hydropathy-0.687
Instability index64.49
Isoelectric point9.27
Molecular weight40224.42
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15082
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.58|      17|      19|     271|     288|       1
---------------------------------------------------------------------------
  249-  265 (31.09/19.63)	EPAAAGHGGP.SEPAAAG
  271-  288 (27.77/22.40)	EPAAEPDAKPdAKPAAES
  291-  303 (17.72/ 7.69)	EPELLP.AEA.AKPA...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      77.00|      16|      18|      64|      79|       5
---------------------------------------------------------------------------
   45-   59 (23.25/ 7.87)	.MMNTPSPQQHLTPQQ
   64-   79 (28.13/10.90)	LMQASQQQQQQLRPSA
   83-   98 (25.62/ 9.34)	LAQSSVPQLQDLQGQA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.47|      15|      18|     158|     172|       7
---------------------------------------------------------------------------
  158-  172 (25.96/13.15)	MFTAAQASSNSQMMA
  178-  192 (27.51/14.42)	MQTMQSQSMMPQMQA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15082 with Med8 domain of Kingdom Viridiplantae
Unable to open file!