<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15081

Description Uncharacterized protein
SequenceHLSDAGDPNTLRFNLASPLPPPPHRNPPTPAMDAAAAAPGAAAGGQQQQQQPAAPRAERLNAEVHNQLNLEGMRARAVGLYKAISRILEDFDAIGRVNPSASPKWQDVLGQFSMVSMELFNIVEDIKKVNKGFVVYPRNVNAENAAILPVMLSSKLLPEMEVEETTKREQLLSGITNLPVPSQMEKLKARIEMIASACETAERVIAECRKSYGLGARQGANLGPMLDKAQAAKIQEQESLLRAAVNYGEGLRVSGDQRQMHSSLPSHLMEVLATGDGAHNFGDNSGAYPKNTPAFSPNNVNAQGNPMQASGGQLLGRSAPSPGTAGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTPQQQRQKLMQASQQQQQQLRPSAAGMLAQSSVPQLQDLQGQAQQKVSGQQQMQYSQAQALSQFQNRQMQARMQPGMSQSQLNQGNQLRSHLGQFTGAANSAMFTAAQASSNSQMMANIPGTMQTMQSQSMMPQMQFGLTGGHPQRSHQMMTDQMYSMGGANTTSMMGMQMQQQQQQQQQQGLYGNMQGGGQSLQQQGMVGLQNQQQQGMVGLQNQQQNQMQNQMQNQLQNQMPNPNFSQQRQQNQQ
Length607
PositionHead
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.04
Grand average of hydropathy-0.737
Instability index58.15
Isoelectric point9.26
Molecular weight66068.55
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15081
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     261.07|      31|      32|     374|     404|       1
---------------------------------------------------------------------------
  379-  411 (44.67/14.13)	QLRPSAAG....MLAQSSVPQLQ.D...LQGQAQ.....qkVSGQQ
  412-  441 (38.85/11.06)	QMQYSQAQ....ALSQ...FQNR.Q...MQARMQ.....pgMSQSQ
  447-  473 (30.82/ 6.84)	QLRSH........LGQFTGAANS.A...MFTAAQ.......ASSNS
  474-  512 (37.91/10.57)	QMMANIPGtmqtMQSQSMMPQMQfG...LTGGHP....qrsHQMMT
  513-  541 (43.41/13.47)	DQMYSMGG....ANTTS....MM.G...MQMQQQ.....qqQQQQQ
  542-  579 (35.69/ 9.40)	GLYGNMQG....G.GQS..LQQQ.GmvgLQNQQQqgmvglqNQQQN
  580-  604 (29.72/ 6.26)	QMQNQMQ...............N.Q...LQNQMP..npnfsQQRQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     152.33|      31|      32|     270|     300|       2
---------------------------------------------------------------------------
  244-  276 (37.26/16.97)	.AVNYGEGlrvSGDQR..QMHSSLPSHLMEVLATGD
  277-  305 (52.28/26.83)	GAHNFGDN...SGAYP..KNTPAFSPNNVN..AQGN
  311-  337 (36.87/16.72)	GGQLLG.R...SAPSPgtAGTPNF.....ENVSTPP
  338-  356 (25.92/ 9.53)	MPYANSPR...SGTNM..MNTP..SP..........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.20|      17|     141|      53|      83|       4
---------------------------------------------------------------------------
   53-   73 (23.71/35.72)	AAPRAErlnaEVHNQLNLEGM
  101-  117 (31.50/11.50)	ASPKWQ....DVLGQFSMVSM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15081 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HLSDAGDPNTLRFNLASPLPPPPHRNPPTPAMDAAAAAPGAAAGGQQQQQQPAAPRAERLNAEVHN
2) LRVSGDQRQMHSSLPSHLMEVLATGDGAHNFGDNSGAYPKNTPAFSPNNVNAQGNPMQASGGQLLGRSAPSPGTAGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTPQQQRQKLMQASQQQQQQLRPSAAGMLAQSSVPQLQDLQGQAQQKVSGQQQMQYSQAQALSQFQNRQMQARMQPGMSQSQLNQGNQLRSHLGQFTGAANSAMFTAAQASSNSQMMANIPGTMQTMQSQSMMPQMQFGLTGGHPQRSHQMMTDQMYSMGGANTTSMMGMQMQQQQQQQQQQGLYGNMQGGGQSLQQQGMVGLQNQQQQGMVGLQNQQQNQMQNQMQNQLQNQMPNPNFSQQRQQNQQ
1
251
66
607










Molecular Recognition Features






MoRF SequenceStartStop




NANANA