<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15080

Description Uncharacterized protein
SequenceGQQQQQQPAAPRAERLNAEVHNQLNLEGMRARAVGLYKAISRILEDFDAIGRVNPSASPKWQDVLGQFSMVSMELFNIVEDIKKVNKGFVVYPRNVNAENAAILPVMLSSKLLPEMEVEETTKREQLLSGITNLPVPSQMEKLKVLDAENTNLFHLLIDLLVVCYIKLDLLLFQARIEMIASACETAERVIAECRKSYGLGARQGANLGPMLDKAQAAKIQEQESLLRAAVNYGEGLRVSGDQRQMHSSLPSHLMEVLATGDGAHNFGDNSGAYPKNTPAFSPNNVNAQGNPMQASGGQLLGRSAPSPGTAGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTPQQQRQKLMQASQQQQQQLRPSAAGMLAQSSVPQLQDLQGQAQQKVSGQQQMQYSQAQALSQFQNRQMQARMQPGMSQSQLNQGNQLRSHLGQFTGAANSAMFTAAQASSNSQMMANIPGTMQTMQSQSMMPQMQQFGLTGGHPQRSHQMMTDQMYSMGGANTTSMMGMQMQQQQQQQQQQGLYGNMQGGGQSLQQQGMVGLQNQQQQGMVGLQNQQQNQMQNQMQNQLQNQMPNPNFSQQRQQNQQ
Length594
PositionHead
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.04
Grand average of hydropathy-0.670
Instability index55.29
Isoelectric point8.86
Molecular weight65375.09
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15080
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     152.33|      31|      32|     256|     286|       2
---------------------------------------------------------------------------
  230-  262 (37.26/17.41)	.AVNYGEGlrvSGDQR..QMHSSLPSHLMEVLATGD
  263-  291 (52.28/27.43)	GAHNFGDN...SGAYP..KNTPAFSPNNVN..AQGN
  297-  323 (36.87/17.15)	GGQLLG.R...SAPSPgtAGTPNF.....ENVSTPP
  324-  342 (25.92/ 9.85)	MPYANSPR...SGTNM..MNTP..SP..........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.37|      31|      41|      19|      54|       4
---------------------------------------------------------------------------
   19-   54 (46.55/51.53)	EVHNQLNLEGMraravGLY...KAISRILEDFDAIGR.VN
   63-   97 (43.83/34.84)	DVLGQFSMVSM.....ELFnivEDIKKVNKGFVVYPRnVN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     179.09|      43|      43|     401|     443|       5
---------------------------------------------------------------------------
  368-  400 (41.61/10.43)	PSAAGMLAQSSVPQLQ.D............LQ.GQAQQKVSGQQQMQ..............
  401-  443 (81.79/28.57)	YSQAQALSQFQNRQMQAR............MQPGMSQSQLNQGNQLRSH......LGQFTG
  450-  507 (55.68/16.78)	FTAAQASS...NSQMMANipgtmqtmqsqsMMPQMQQFGLTGGHPQRSHqmmtdqMYSMGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.69|      19|     188|     344|     365|       7
---------------------------------------------------------------------------
  346-  364 (33.58/16.46)	LTPQQQRQKLMQASQQQQQ
  576-  594 (34.11/ 6.71)	LQNQMPNPNFSQQRQQNQQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15080 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) VLATGDGAHNFGDNSGAYPKNTPAFSPNNVNAQGNPMQASGGQLLGRSAPSPGTAGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTPQQQRQKLMQASQQQQQQLRPSAAGMLAQSSVPQLQDLQGQAQQKVSGQQQMQYSQAQALSQFQNRQMQARMQPGMSQSQLNQGNQLRSHLGQFTGAANSAMFTAAQASSNSQMMANIPGTMQTMQSQSMMPQMQQFGLTGGHPQRSHQMMTDQMYSMGGANTTSMMGMQMQQQQQQQQQQGLYGNMQGGGQSLQQQGMVGLQNQQQQGMVGLQNQQQNQMQNQMQNQLQNQMPNPNFSQQRQQNQQ
257
594










Molecular Recognition Features






MoRF SequenceStartStop




1) QQQQGLYGNM
525
534