<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15079

Description Uncharacterized protein
SequenceDAGDPNTLRFNLASPLPPPPHRNPPTPAMDAAAAAPGAAAGGQQQQQQPAAPRAERLNAEVHNQLNLEGMRARAVGLYKAISRILEDFDAIGRVNPSASPKWQDVLGQFSMVSMELFNIVEDIKKVNKGFVVYPRNVNAENAAILPVMLSSKLLPEMEVEETTKREQLLSGITNLPVPSQMEKLKARIEMIASACETAERVIAECRKSYGLGARQGANLGPMLDKAQAAKIQEQESLLRAAVNYGEGLRVSGDQRQMHSSLPSHLMEVLATGDGAHNFGDNSGAYPKNTPAFSPNNVNAQGNPMQASGGQLLGRSAPSPGTAGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTPQQQRQKLMQASQQQQQQLRPSAAGMLAQSSVPQLQDLQGQAQQKVQVSGQQQMQYSQAQALSQFQNRQMQARMQPGMSQSQLNQGNQLRSHLGQFTGAANSAMFTAAQASSNSQMMANIPGTMQTMQSQSMMPQMQQFGLTGGHPQRSHQMMTDQMYSMGGANTTSMMGMQMQQQQQQQQQQGLYGNMQGGGQSLQQQGMVGLQNQQQQGMVGLQNQQQNQMQNQMQNQLQNQMPNPNFSQQRQQNQQ
Length607
PositionHead
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.04
Grand average of hydropathy-0.741
Instability index58.34
Isoelectric point9.26
Molecular weight66086.57
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15079
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     228.98|      34|      34|     463|     496|       1
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  327-  363 (34.98/ 6.64)	FE..NVSTPPMPYANSPrsGTnMMN.TPSpqQHLTP.QQQR
  366-  395 (40.34/ 8.91)	LMQASQQQQQQLRPSAA..G......MLA..QSSVP.QLQD
  463-  496 (62.43/18.27)	FTAAQASSNSQMMANIP..GT.MQT.MQS..QSMMP.QMQQ
  499-  533 (44.58/10.70)	LTGGHPQRSHQMMTDQM..YS.MGG.ANT..TSMMGmQMQQ
  570-  604 (46.65/11.58)	MVGLQNQQQNQMQNQMQ..NQ.LQNqMPN..PNFSQ.QRQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.36|      30|      33|     397|     428|       3
---------------------------------------------------------------------------
  399-  428 (53.08/23.20)	QAQQKVQVSGQQQMQYSQAQA.LSQFQ...NRQM
  429-  462 (44.28/13.61)	QARMQPGMSQSQLNQGNQLRShLGQFTgaaNSAM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.98|      27|      33|     222|     252|       4
---------------------------------------------------------------------------
  222-  252 (34.70/30.38)	MlDKAQAAKIQEQESLLRAAVNYGEGlrvSG
  257-  283 (47.28/28.17)	M.HSSLPSHLMEVLATGDGAHNFGDN...SG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.89|      18|     157|     134|     154|       6
---------------------------------------------------------------------------
  134-  154 (27.00/20.42)	PRNVNAENAailPVMLS.SKLL
  294-  312 (29.89/15.19)	PNNVNAQGN...PMQASgGQLL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.44|      24|     141|      50|      74|       7
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   50-   74 (37.34/28.89)	AAPRAERLNAEVHNQLNLeGMRARA
  194-  217 (43.10/28.67)	ACETAERVIAECRKSYGL.GARQGA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15079 with Med8 domain of Kingdom Viridiplantae
Unable to open file!