<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15078

Description Uncharacterized protein
SequenceHLSDAGDPNTLRFNLASPLPPPPHRNPPTPAMDAAAAAPGAAAGGQQQQQQPAAPRAERLNAEVHNQLNLEGMRARAVGLYKAISRILEDFDAIGRVNPSASPKWQDVLGQFSMVSMELFNIVEDIKKVNKGFVVYPRNVNAENAAILPVMLSSKLLPEMEVEETTKREQLLSGITNLPVPSQMEKLKARIEMIASACETAERVIAECRKSYGLGARQGANLGPMLDKAQAAKIQEQESLLRAAVNYGEGLRVSGDQRQMHSSLPSHLMEVLATGDGAHNFGDNSGAYPKNTPAFSPNNVNAQGNPMQASGGQLLGRSAPSPGTAGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTPQQQRQKLMQASQQQQQQLRPSAAGMLAQSSVPQLQDLQGQAQQKVSGQQQMQYSQAQALSQFQNRQMQARMQPGMSQSQLNQGNQLRSHLGQFTGAANSAMFTAAQASSNSQMMANIPGTMQTMQSQSMMPQMQQFGLTGGHPQRSHQMMTDQMYSMGGANTTSMMGMQMQQQQQQQQQQGLYGNMQGGGQSLQQQGMVGLQNQQQQGMVGLQNQQQNQMQNQMQNQLQNQMPNPNFSQQRQQNQQ
Length608
PositionHead
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.04
Grand average of hydropathy-0.741
Instability index58.39
Isoelectric point9.26
Molecular weight66196.68
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15078
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     265.53|      31|      32|     374|     404|       2
---------------------------------------------------------------------------
  303-  339 (31.99/ 7.70)	QGNPMQASGGQLLGRSapsPGtagtPNFENVSTPPM........P.
  340-  375 (37.39/10.57)	YANSPRSGTN.MMNT....PS....PQ.QHLTPQQQrqklmqasQQ
  376-  408 (44.41/14.30)	QQQQLRPSAAGMLAQS...SV....PQLQDLQGQAQ......qkVS
  409-  434 (42.29/13.17)	GQQQMQYSQAQALS............QFQNRQMQAR........MQ
  444-  470 (34.98/ 9.29)	QGNQLRSH....LGQF...TG....AANSAMFTAAQ........AS
  563-  581 (29.82/ 6.55)	LQNQQQQGMVG...................LQNQQQ........NQ
  582-  605 (44.65/14.43)	MQNQMQ...NQLQNQM...PN....PNFSQ...Q.R........QQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.03|      16|      33|     474|     492|       3
---------------------------------------------------------------------------
  474-  490 (24.89/ 9.79)	QMMA.NIPGTmQTMQSQS
  494-  510 (23.14/ 7.88)	QMQQfGLTGG.HPQRSHQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.98|      27|      33|     225|     255|       4
---------------------------------------------------------------------------
  225-  255 (34.70/38.41)	MlDKAQAAKIQEQESLLRAAVNYGEGlrvSG
  260-  286 (47.28/35.62)	M.HSSLPSHLMEVLATGDGAHNFGDN...SG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.44|      24|     141|      53|      77|       5
---------------------------------------------------------------------------
   53-   77 (37.34/32.05)	AAPRAERLNAEVHNQLNLeGMRARA
  197-  220 (43.10/31.81)	ACETAERVIAECRKSYGL.GARQGA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15078 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HLSDAGDPNTLRFNLASPLPPPPHRNPPTPAMDAAAAAPGAAAGGQQQQQQPAAPRAERLNAEVHN
2) LRVSGDQRQMHSSLPSHLMEVLATGDGAHNFGDNSGAYPKNTPAFSPNNVNAQGNPMQASGGQLLGRSAPSPGTAGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTPQQQRQKLMQASQQQQQQLRPSAAGMLAQSSVPQLQDLQGQAQQKVSGQQQMQYSQAQALSQFQNRQMQARMQPGMSQSQLNQGNQLRSHLGQFTGAANSAMFTAAQASSNSQMMANIPGTMQTMQSQSMMPQMQQFGLTGGHPQRSHQMMTDQMYSMGGANTTSMMGMQMQQQQQQQQQQGLYGNMQGGGQSLQQQGMVGLQNQQQQGMVGLQNQQQNQMQNQMQNQLQNQMPNPNFSQQRQQNQQ
1
251
66
608










Molecular Recognition Features






MoRF SequenceStartStop




NANANA