<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15077

Description Uncharacterized protein
SequenceAGGQQQQQQPAAPRAERLNAEVHNQLNLEGMRARAVGLYKAISRILEDFDAIGRVNPSASPKWQDVLGQFSMVSMELFNIVEDIKKVNKGFVVYPRNVNAENAAILPVMLSSKLLPEMEVEETTKREQLLSGITNLPVPSQMEKLKARIEMIASACETAERVIAECRKSYGLGARQGANLGPMLDKAQAAKIQEQESLLRAAVNYGEGLRVSGDQRQMHSSLPSHLMEVLATGDGAHNFGDNSGAYPKNTPAFSPNNVNAQGNPMQASGGQLLGRSAPSPGTAGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTPQQQRQKLMQASQQQQQQLRPSAAGMLAQSSVPQLQDLQGQAQQKVSGQQQMQYSQAQALSQFQNRQMQARMQPGMSQSQLNQGNQLRSHLGQFTGAANSAMFTAAQASSNSQMMANIPGTMQTMQSQSMMPQMQAVWFDWWASSEESSNDDRPNVQYGRRKYHEHDGNANATATAAAAAARAIWEHARRRSEPAAAGHGGPSEPAAAGHGGPSEPAAEPDAKPDAKPAAESDAEPELLPAEAAKPAMIHSSGLTNRVLPKRDTVPGQSRGSIGWTMLPLTTHRFVGFSLCAVMTTGYQRFTIGFACVQWLCTFKWS
Length636
PositionHead
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.05
Grand average of hydropathy-0.578
Instability index57.04
Isoelectric point8.69
Molecular weight68793.54
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
defense response to fungus	GO:0050832	IEA:EnsemblPlants
regulation of flower development	GO:0009909	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15077
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.78|      14|      17|     369|     385|       1
---------------------------------------------------------------------------
  352-  365 (22.77/ 8.22)	PQLQDLQGQA..Q.QKV
  369-  385 (19.01/15.38)	QQMQYSQAQAlsQfQNR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.86|      17|      19|     534|     551|       2
---------------------------------------------------------------------------
  512-  528 (31.09/15.38)	EPAAAGHGGP.SEPAAAG
  534-  551 (27.77/17.59)	EPAAEPDAKPdAKPAAES
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.10|      30|      32|     255|     286|       3
---------------------------------------------------------------------------
  255-  284 (54.66/21.20)	PNNVNAQGNPMQASGGQLLGR...SAPSPGTAG
  286-  318 (44.44/20.57)	PNFENVSTPPMPYANSPRSGTnmmNTPSPQQHL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.81|      17|      32|     183|     213|       5
---------------------------------------------------------------------------
  183-  213 (18.14/41.64)	MldkaqaakiqeQESL...L.......RAAVNYGEGlrvSG
  218-  244 (20.67/10.94)	M...........HSSLpshLmevlatgDGAHNFGDN...SG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.93|      17|      44|     386|     402|       6
---------------------------------------------------------------------------
  393-  409 (27.69/13.36)	PGMSQSQLNQGNQLRSH
  438-  454 (31.24/16.09)	PGTMQTMQSQSMMPQMQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      32.03|      10|      18|     571|     588|       8
---------------------------------------------------------------------------
  131-  140 (21.07/ 6.37)	SGITN..LP....VPS
  571-  586 (10.96/22.05)	SGLTNrvLPkrdtVPG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15077 with Med8 domain of Kingdom Viridiplantae
Unable to open file!