<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15076

Description Uncharacterized protein
SequenceQSPNSGDGRGGGGTGRRGGRAAAAAATGGSPGGAAERGGAQPVEPGGHAGARGGALQGHLPHPRGLRRHRPRQPQRLPQVAGRARAVLHGEHGALQHRGGHQEGEQGVRRVPQERQRRERLLPVMLSSKLLPEMEVEETTKREQLLSGITNLPVPSQMEKLKARIEMIASACETAERVIAECRKSYGLGARQGANLGPMLDKAQAAKIQEQESLLRAAVNYGEGLRVSGDQRQMHSSLPSHLMEVLATGDGAHNFGDNSGAYPKNTPAFSPNNVNAQGNPMHLEDNYLADLLHRLELPEPLILKMCLLLQCHMLTPLGQAPI
Length322
PositionHead
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.02
Grand average of hydropathy-0.615
Instability index58.29
Isoelectric point9.60
Molecular weight34383.59
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15076
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     118.89|      35|      43|      38|      78|       2
---------------------------------------------------------------------------
   38-   78 (61.96/31.15)	GGAQPVEPGGHagargGALQ...GHLPHPRGLRRhRPRQPQR....LP
   82-  123 (56.93/19.10)	GRARAVLHGEH.....GALQhrgGHQEGEQGVRR.VPQERQRrerlLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      87.85|      23|      26|     209|     231|       3
---------------------------------------------------------------------------
  183-  207 (22.33/ 8.18)	RKSYGL..gARQGANLGPMLdKAQAAK
  209-  231 (35.86/16.57)	QEQESL...LRAAVNYGEGL.RVSGDQ
  233-  258 (29.66/12.72)	QMHSSLpshLMEVLATGDGA.HNFGDN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15076 with Med8 domain of Kingdom Viridiplantae
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