<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15075

Description Uncharacterized protein
SequenceMHSSLPSHLMEVLATGDGAHNFGDNSGAYPKNTPAFSPNNVNAQGNPMQASGGQLLGRSAPSPGTAGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTPQQQRQKLMQASQQQQQQLRPSAAGMLAQSSVPQLQDLQGQAQQKVSGQQQMQYSQAQALSQFQNRQMQARMQPGMSQSQLNQGNQLRSHLGQFTGAANSAMFTAAQASSNSQMMANIPGTMQTMQSQSMMPQMQAVWFDWWASSEESSNDDRPNVQYGRRKYHEHDGNANATATAAAAAARAIWEHARRRSEPAAAGHGGPSEPAAAGHGGPSEPAAEPDAKPDAKPAAESDAEPELLPAEAAKPAMIHSSGLTNRVLPKRDTVPGQSRGSIGWTMLPLTTHRFVGFSLCAVMTTGYQRFTIGFACVQWLCTFKWS
Length419
PositionHead
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.06
Grand average of hydropathy-0.691
Instability index61.80
Isoelectric point8.79
Molecular weight44924.43
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15075
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.78|      14|      17|     152|     168|       1
---------------------------------------------------------------------------
  135-  148 (22.77/ 7.15)	PQLQDLQGQA..Q.QKV
  152-  168 (19.01/13.60)	QQMQYSQAQAlsQfQNR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.86|      17|      19|     317|     334|       2
---------------------------------------------------------------------------
  295-  311 (31.09/12.53)	EPAAAGHGGP.SEPAAAG
  317-  334 (27.77/14.37)	EPAAEPDAKPdAKPAAES
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     184.78|      42|      60|      26|      67|       3
---------------------------------------------------------------------------
   26-   67 (77.70/29.48)	SGAYPKNTPAFSP.NNVNAQGNP...MQASGGQLLGRSAPSPGTAG
   87-  127 (57.24/20.02)	SGTNMMNTP..SPqQHLTPQQQRqklMQASQQQ...QQQLRPSAAG
  172-  207 (49.84/16.59)	....ARMQPGMSQ.SQLN.QGNQ...LRSHLGQFTGAANSAMFTA.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.75|      16|      18|     354|     371|       4
---------------------------------------------------------------------------
  343-  362 (18.12/11.56)	AEAAKPAmiHSSG...LTnrVLP
  363-  381 (26.63/11.49)	KRDTVPG..QSRGsigWT..MLP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15075 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AVWFDWWASSEESSNDDRPNVQYGRRKYHEHDGNANATATAAAAAARAIWEHARRRSEPAAAGHGGPSEPAAAGHGGPSEPAAEPDAKPDAKPAAESDAEPELLPAEAAKPA
2) MHSSLPSHLMEVLATGDGAHNFGDNSGAYPKNTPAFSPNNVNAQGNPMQASGGQLLGRSAPSPGTAGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTPQQQRQKLMQASQQQQQQLRPSAAGMLAQSSVPQLQDLQGQAQQKVSGQQQMQYSQAQALSQFQNRQMQARMQPGMSQSQLNQGNQLRSHLGQFTGAANSAMFTAAQASSNSQMMANIPGTMQTMQSQSM
238
1
349
232










Molecular Recognition Features






MoRF SequenceStartStop




1) RAIWEH
2) YGRRKY
284
260
289
265