<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15074

Description Uncharacterized protein
SequenceRAERLNAEVHNQLNLEGMRARAVGLYKAISRILEDFDAIGRVNPSASPKWQDVLGQFSMVSMELFNIVEDIKKVNKGFVVYPRNVNAENAAILPVMLSSKLLPEMEVEETTKREQLLSGITNLPVPSQMEKLKARIEMIASACETAERVIAECRKSYGLGARQGANLGPMLDKAQAAKIQEQESLLRAAVNYGEGLRVSGDQRQMHSSLPSHLMEVLATGDGAHNFGDNSGAYPKNTPAFSPNNVNAQGNPMQASGGQLLGRSAPSPGTAGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTPQQQRQKLMQASQQQQQQLRPSAAGMLAQSSVPQLQDLQGQAQQKVSGQQQMQYSQAQALSQFQNRQMQARMQPGMSQSQLNQGNQLRSHLGQFTGAANSAMFTAAQASSNSQMMANIPGTMQTMQSQSMMPQMQQFGLTGGHPQRSHQMMTDQMYSMGGANTTSMMGMQMQQQQQQQQQQGLYGNMQGGGQSLQQQGMVGLQNQQQQGMVGLQNQQQNQMQNQMQNQLQNQMPNPNFSQQRQQNQQ
Length553
PositionHead
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.04
Grand average of hydropathy-0.746
Instability index56.88
Isoelectric point9.37
Molecular weight60728.72
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15074
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     148.78|      30|      32|     319|     349|       2
---------------------------------------------------------------------------
  324-  356 (38.75/13.76)	QLRPSAAGMLAQSSVpQLQDLQGQ....A....QqkVS.........GQQ
  357-  391 (33.80/ 7.91)	QMQYSQAQALS.....QFQNRQMQ....A....R..MQpgmsqsqlnQGN
  492-  525 (40.97/11.31)	NMQGGGQSLQQQGMV.GLQNQQQQ....GmvglQ..NQ.........QQN
  526-  552 (35.26/ 8.60)	QMQ...NQMQN.....QLQNQMPNpnfsQ....Q..RQ.........QNQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     202.57|      31|      33|     237|     267|       3
---------------------------------------------------------------------------
  215-  243 (41.84/14.53)	EVLATGDGA.....HNFGDN..SGAYP.........KN....TPAFSPN
  244-  274 (50.48/19.03)	NVNAQGNPM.....QASGGQLLGRSAP.........SP....GTAGTPN
  275-  312 (37.65/12.35)	FENVSTPPMpyansPRSGTNMM..NTP.........SPqqhlTPQQQRQ
  404-  442 (35.78/11.38)	ANSAMFTAA.....QASSNSQMMANIPgtmqtmqsqSM....MPQMQ.Q
  443-  469 (36.82/11.92)	FGLTGGHPQ.....R..SHQMMTDQMY.........SM....GGANT..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.56|      22|     142|       2|      28|       4
---------------------------------------------------------------------------
    2-   24 (33.76/19.51)	AERLNAEVHNQLNLeGMRARA.VG
  146-  168 (33.79/14.69)	AERVIAECRKSYGL.GARQGAnLG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15074 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LRVSGDQRQMHSSLPSHLMEVLATGDGAHNFGDNSGAYPKNTPAFSPNNVNAQGNPMQASGGQLLGRSAPSPGTAGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTPQQQRQKLMQASQQQQQQLRPSAAGMLAQSSVPQLQDLQGQAQQKVSGQQQMQYSQAQALSQFQNRQMQARMQPGMSQSQLNQGNQLRSHLGQFTGAANSAMFTAAQASSNSQMMANIPGTMQTMQSQSMMPQMQQFGLTGGHPQRSHQMMTDQMYSMGGANTTSMMGMQMQQQQQQQQQQGLYGNMQGGGQSLQQQGMVGLQNQQQQGMVGLQNQQQNQMQNQMQNQLQNQMPNPNFSQQRQQNQQ
196
553










Molecular Recognition Features






MoRF SequenceStartStop




1) QQQGLYGNM
485
493