<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15071

Description Uncharacterized protein
SequenceMDAAAAAPGAAAGGQQQQQQPAAPRAERLNAEVHNQLNLEGMRARAVGLYKAISRILEDFDAIGRVNPSASPKWQDVLGQFSMVSMELFNIVEDIKKVNKLLPEMEVEETTKREQLLSGITNLPVPSQMEKLKARIEMIASACETAERVIAECRKSYGLGARQGANLGPMLDKAQAAKIQEQESLLRAAVNYGEGLRVSGDQRQMHSSLPSHLMEVLATGDGAHNFGDNSGAYPKNTPAFSPNNVNAQGNPMQASGGQLLGRSAPSPGTAGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTPQQQRQKLMQASQQQQQQLRPSAAGMLAQSSVPQLQDLQGQAQQKVQVSGQQQMQYSQAQALSQFQNRQMQARMQPGMSQSQLNQGNQLRSHLGQFTGAANSAMFTAAQASSNSQMMANIPGTMQTMQSQSMMPQMQVNAFLVRY
Length451
PositionHead
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.04
Grand average of hydropathy-0.589
Instability index55.90
Isoelectric point9.18
Molecular weight48804.53
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15071
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     213.65|      56|      60|     303|     360|       1
---------------------------------------------------------------------------
   12-   47 (36.72/ 9.17)	..AGGQQ...QQQ.QPAAprAERLNAEVHNQ.......L.NLEGMRARAV.....................................................
  252-  312 (30.51/ 8.13)	MQASGGQllgRSAPSPGT..AG........................................tpnfenvstppmpyansprsgtnmmntpspqQHLTPQQQRQ
  315-  375 (92.77/32.68)	MQASQQQ...QQQLRPSA..AGMLAQSSVPQ.......LQDLQGQAQQKV....QVSGQQQM..........................qysqaQALSQFQNRQ
  376-  443 (53.64/16.81)	MQARMQ.........PG......MSQSQLNQgnqlrshLGQFTGAANSAMftaaQASSNSQM..................manipgtmqtmqsQSMMPQMQ..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.39|      21|      33|      48|      68|       2
---------------------------------------------------------------------------
   48-   68 (35.76/35.59)	GLYKAIS....RILEDFDAIGRVNP
   79-  103 (29.62/28.10)	GQFSMVSmelfNIVEDIKKVNKLLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.98|      27|      33|     170|     200|       3
---------------------------------------------------------------------------
  170-  200 (34.70/32.68)	MlDKAQAAKIQEQESLLRAAVNYGEGlrvSG
  205-  231 (47.28/30.32)	M.HSSLPSHLMEVLATGDGAHNFGDN...SG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.29|      11|      48|     234|     251|       4
---------------------------------------------------------------------------
  234-  245 (18.38/ 7.27)	P.KNTPAfSPNNV
  284-  295 (16.91/11.00)	PyANSPR.SGTNM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15071 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AAAAAPGAAAGGQQQQQQPAAPRAERLNAEVH
2) GLRVSGDQRQMHSSLPSHLMEVLATGDGAHNFGDNSGAYPKNTPAFSPNNVNAQGNPMQASGGQLLGRSAPSPGTAGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTPQQQRQKLMQASQQQQQQLRPSAAGMLAQSSVPQLQDLQGQAQQKVQVSGQQQMQYSQAQALSQFQNRQMQARMQPGMSQSQLNQGNQLRSHLGQFT
3
195
34
403










Molecular Recognition Features






MoRF SequenceStartStop




NANANA