<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15061

Description Uncharacterized protein
SequenceMDMAAGNSPEQPSPDSGEEMKKVYVAVGAGSDSKAMVLWALHKFPKDSAAASLVLLHVYPRPKLIPIMGARIPASQVQEQELIAYKKMELQTISDTLDQHLLLCAQEKVQAKKLVVESEDVAEGLVQLIAARHVTALVMGAAADKHYTKKMRALKSKKAQAVEQRADPSCKVWYICKGTLVYRRNAVPLGHEAMPEGMQEYAAQQFSVDRSTSLSETWCVSSTWLHKPHARLQMERTSPCGSDGNEKEIVKEFDEANIKFQHMLKELESARKQAYEEKCGREKAERDLFEAFQKARASENMYLGEVKQKNEIEEKLATVTEEVERLTETTDALDAKLREECKKRSALEKRTTHSDRIIKDLMLQLNKAVREVEALHAKKRESSATAEGTMHITELSSSEIKDATNNFDHSLKVGESVYGSVYKGFLRHTNVAIKKLNPESTQSQSQFNQEIEILSRVRHPNLVTLIGACKDAQALVYEYMPNGSLDDRLACKDNSKPLSWQLRIRIISHVCSALIFLHSNKPHSIVHSDLKASNILLDGNNVAKLSGFGVCRMFTDEFRDTTTLYRHTHPKGSFVYIDPEYVMTGDLTPLSDVYSFGIVLLRLLTGRPGFGLLKDVQQAVEKGCLEAILDSSAGDWPAMQAEQLARVGLKCCEIRRKNRPDLQKGVWTVLEPMLKPASIMMCSLSFKSVSEDLGGVPPYFICPILQDVMREPLIAADGFTYEAEAIREWIDSGHHTSPMTNLELLHGDLLPNHALRSAIQEWLQTDAQ
Length768
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.06
Grand average of hydropathy-0.373
Instability index42.56
Isoelectric point6.44
Molecular weight86032.63
Publications
PubMed=23075845

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15061
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.45|      26|      37|     230|     266|       1
---------------------------------------------------------------------------
  230-  256 (40.16/50.19)	ARLQMERTSpCGSDGNEKEIVKEFDEA
  270-  295 (44.29/23.90)	ARKQAYEEK.CGREKAERDLFEAFQKA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      93.87|      30|      39|     331|     360|       2
---------------------------------------------------------------------------
  305-  339 (29.05/16.59)	EVKQKNEIEEKlATV....TEEVerLTE..........ttDALDAKLRE
  340-  381 (40.71/26.24)	ECKKRSALEKR.TTH....SDRI..IKDlmlqlnkavrevEALHAKKRE
  382-  412 (24.10/12.49)	S....SATAEG.TMHitelSSSE..IKD..........atNNFDHSLK.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.41|      14|     536|     175|     197|       3
---------------------------------------------------------------------------
  157-  170 (23.57/21.08)	KKAQAVEQRADPSC
  184-  197 (24.84/ 6.73)	RNAVPLGHEAMPEG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     203.39|      67|     391|      23|      97|       4
---------------------------------------------------------------------------
   23-   97 (99.80/99.56)	VYVAVGAGSDSKAMVlwALHKF.PKDSAAAS.....LVLLHVYPRPKLIPIMGAripasqVQEQELIAYKKMELQTISDTL
  417-  489 (103.59/79.41)	VYGSVYKGFLRHTNV..AIKKLnPESTQSQSqfnqeIEILSRVRHPNLVTLIGA......CKDAQALVYEYMPNGSLDDRL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      32.58|      11|      24|     103|     115|       6
---------------------------------------------------------------------------
  103-  115 (14.43/14.22)	LCAQEKVQAkkLV
  128-  138 (18.15/10.25)	LIAARHVTA..LV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15061 with Med32 domain of Kingdom Viridiplantae
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