<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15044

Description Uncharacterized protein
SequenceNNYGLTNYHLSLCLKSKVEITQVVHVDYESCMNRKRKVPKSKVAAGVHLQAKPYCQIFFTCKETLGCSREATQLCTKVESPRSSCASTISDQPELTPRSVSLPPGHPGLLGPIGQQPLPRRSNSVSYPLSGLIADNVENTPAARRQSIDNLLVSTDQQPLPRRSNSVSYPSPGLIAGSVEIMSAARRQSIDMTPTGSSPSSSQQSTGGSSLGLRDLDSMDGSPVPVSVASSEEHQHSMVEIHETFEQLHLVRNQLERSKKEASEGRQKAERDLFESSMMVFYLLLTDNFSYPLLNLLYFTNLSSLNTWNLYYMYLSSKRTVFLQFKARESSLRKEKKEAEERLTREKIDLEKEHLHVCNELQKANEERAELESKLLQTNALMEELRQMQAELEREKEHAVKEAEEMRQTIGNSVFGPTSAVTLTEFSYTEIKEATDNFDDSKKIGSGGCGTVYKGFLRHTTVAIKKFNREGTTGDKEFNDEVETLSRMRHPNLVTLIGVCREAKALVFEFLSNGSLEDCLQGEHPREPLSWRMRIRIAADICTGLIFLHSNKPKGIAHGDLKPDNVLLDTSFVCKLADFGISRPLDVTNTTITPYHRTNQIKGTMGYMDPGYIASGEITAQYDVYSFGVVLMRLLTGKSPLGLPNEVEAALSNDMLQDIIDTSAGEWPPEYTEELARLALRCCRYERKQRPNLANEAWGILQAMMNCPDDKCKPPTYFICPMTQEIMRDPHIAADGFTYEGDAIKDWFQRGHKMSPMTYLSFTHHELIPNTALRFAIQEWQMQQQP
Length786
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.07
Grand average of hydropathy-0.492
Instability index43.33
Isoelectric point6.08
Molecular weight88484.45
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15044
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      88.27|      13|      21|     113|     125|       1
---------------------------------------------------------------------------
   89-  102 (17.55/ 7.35)	ISDQPeLTPRSVSL
  113-  125 (26.58/14.78)	IGQQP.LPRRSNSV
  137-  148 (18.12/ 7.82)	VENTP.AARR.QSI
  155-  167 (26.02/14.32)	TDQQP.LPRRSNSV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.55|      19|      75|     255|     273|       2
---------------------------------------------------------------------------
  255-  273 (32.69/22.18)	LERSKKEASEGRQKAERDL
  332-  350 (30.85/20.52)	LRKEKKEAEERLTREKIDL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     189.16|      60|     139|     497|     565|       3
---------------------------------------------------------------------------
  497-  565 (94.88/82.29)	IGVCREAKALvfefLSNGSLEDCLQ...GEHPrePLSWRMRIRIAADICTgliFLHSNKPK......GIAHGDLK.PDN
  641-  710 (94.29/59.06)	LGLPNEVEAA....LSNDMLQDIIDtsaGEWP..PEYTEELARLALRCCR...YERKQRPNlaneawGILQAMMNcPDD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     134.50|      39|     161|     415|     453|       4
---------------------------------------------------------------------------
  415-  453 (68.55/53.77)	FGPTSAV.....TLTEFSYTEIKEATDNFDDSKKIGSGGCGTVY
  579-  622 (65.95/51.42)	FGISRPLdvtntTITPYHRTNQIKGTMGYMDPGYIASGEITAQY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.39|      17|      28|     188|     204|       6
---------------------------------------------------------------------------
  188-  204 (30.80/17.69)	QSIDMTPTGSSPSSSQQ
  217-  233 (29.59/16.73)	DSMDGSPVPVSVASSEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.92|      20|      20|     368|     387|      10
---------------------------------------------------------------------------
  368-  387 (31.97/20.46)	RAELESKLLQTNALMEELRQ
  389-  408 (32.96/21.31)	QAELEREKEHAVKEAEEMRQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15044 with Med32 domain of Kingdom Viridiplantae
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