<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15034

Description Uncharacterized protein
SequenceMAGAGGVGRSGEDEDGEGERGGGAAEVQVYCAVGKEAGREWRANLRWVLANFPRSRHRLVLAHVHRPPHRINMMGAWVPVSQLAEHEVAAYSKLEEDRASKALDVLIDICASQRVQARKVVVSGDDAARGLVQLVDDHAVAELVMGAAADRGYTRKLRTPKSKKAVTVQRKANPSCRIWFVCKGNLICTREVSEELNRGEPSTASTSPRSVASDYSRSKSSPPRLTLHGDCDGDGELFGLQHDSRDPMMAASLRRTPSRDDSDNAEDHSVEDFGHEGAAEGGSSAVVHSLQDVDEDPPTPSHDGSEEEAGDMEDALYEKLKDAITEAGSLRHEAYEETRRRQKADRDLADASRMAREAESSYHGEARRRKEMEESLTRERAAMEQERRELDAILEKIRAVDDRSAELELQITDSGRVMSELDVRMSESCSVLDALRRGRRGEDPAADEESMPAVDGGNQDVSFLRLGLSELEEATDRFHESAMIGGAGAGSRGRVYRGSLRGMSVAVKMICPDVAVDEARFGRAVDAIARARHPHIVSLVGACPEARAVVHELVPGGSLEDRLAGKAPPLPWHARCGVAYRTCSALAYLHSTATVHGDVRPANILLDDERCSSSKLAGLGMPGLVVPPQLPSGVALAYVDPRYLATGELTPQCDVHALGVVLLRLVTGMPAFAAKKAAQKAAEGSTPWHEVVDASAGGWPMERATEVALLGLKCCDAVETGGPRRAGELLDEALGVLEAATNATPGRTWSSLSASTASDSGGAPSYFLCPILKEVMRDPQIAGDGFTYEAGAMKEWLGSGHDTSPMTNLKLPTDELMPNHALRAAIQEWRHTRPSTFHRHL
Length841
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.04
Grand average of hydropathy-0.450
Instability index45.84
Isoelectric point5.53
Molecular weight90787.72
Publications
PubMed=23075845

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15034
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.94|      24|      26|     335|     359|       1
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  335-  359 (35.86/24.49)	YEETRRRQKADRDLAdASRMAREAE
  363-  386 (41.08/23.59)	HGEARRRKEMEESLT.RERAAMEQE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.56|      18|     257|      10|      27|       2
---------------------------------------------------------------------------
   10-   27 (32.46/14.10)	SGEDEDGEGERGGGAAEV
  269-  286 (32.11/13.86)	SVEDFGHEGAAEGGSSAV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     733.64|     240|     480|      31|     316|       3
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   31-  316 (367.58/204.49)	C...AVgKEA..GREWRAnlrwvlanFPRSRHrlvlahvhrpPHRINMMGAwVPVSQLAEHEVAAYSKLEEDRASKA........LDVLIDICASQRVQARKVVVSGDdaARGLVQLVDD..........HAVAELVMGAAADRGYTRKLRTPKSkkavTVQRKANPSCRIWF..VCKGNLICTREVSEELNRGEPSTASTSPRSVASDYSRSKSSPPRLT...LHG..DCD....GDGELFGLQHDSRDPMMAASLRRTPSRDDSDNAEDhsvedfghegaaeggssavVHSLQDVDEDPPTPShDGSEEEAGDMEDAL
  511-  797 (366.05/160.71)	CpdvAV.DEArfGRAVDA........IARARH..........PHIVSLVGA.CPEARAVVHELVPGGSLEDRLAGKApplpwharCGVAYRTCSALAYLHSTATVHGD..VRPANILLDDercsssklagLGMPGLVVPPQLPSGVALAYVDPRY....LATGELTPQCDVHAlgVVLLRLVTGMPAFAAKKAAQKAAEGSTPWHEVVDASAGGWPMERATevaLLGlkCCDavetGGPRRAGELLDEALGVLEAATNATPGRTWSSLSAS......tasdsggapsyflCPILKEVMRDPQIAG.DGFTYEAGAMKEWL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.31|      23|      27|     435|     457|       4
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  435-  457 (41.09/24.70)	LRRGRRGEDPAADEESMPAVDGG
  464-  486 (39.22/23.19)	LRLGLSELEEATDRFHESAMIGG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15034 with Med32 domain of Kingdom Viridiplantae
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