<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15030

Description Uncharacterized protein
SequenceENPHFTHKKRKRKPTLSKGRCWPPVGEENSSGFARERPRGFVEGALPAMVEGMASERQLVVVVEGTAALGPYWTAIATEYVEKIVRSFCSTELSGQKLAGVPPELALVVFHTHGPYSAFVVQRSGWTKDMDAFLSWLSGISFSGGGFSGAAICEGLAEALMILQGSPSNSQNHQNRELQKHCLLVAASNPYPLPTPVYRPSVQSSDHKKSNEATKESCLADAEAVAVSFAQCSVSLSVVSPKQLPTLKAIYNAGKRNPQASDPSVDHAKTPHFLVLLSESFMEARTALSHPLPGNLVPNHTITKMDTAPATTVPGPPSNASPSVNGTMMGRQPTANVKVEPTTIPPMVSQPAFSHMTPISNVASQGISAMQTSSPLIISQETNVANEILQEHKPLVNPIQQQVRPGGPANGSILNNLSQHRHSLTAATSMGPNMGATPIQVHMSNMLSSGMTSTPAVISSISGTVQPIGAQQLVQNTALGSFGSNTSTVSGNSNIAVSSSLANIQSNMAMGQSVPSMAQGGLMAGSQSGQGGIGTNQNMINNLGTTAISSTPTMMPTPGMVQQTGVNALSVNNSSAMNMPMPQHPNGQQPSKYVKIWEGTLSGQRQGQPVFICKLEVSSYLYC
Length623
PositionUnknown
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.05
Grand average of hydropathy-0.210
Instability index45.23
Isoelectric point8.82
Molecular weight65664.82
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15030
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     129.01|      39|      48|      19|      61|       1
---------------------------------------------------------------------------
   19-   61 (65.55/52.81)	GRCWPPVGEEnssgFARERPRGFVEGALPAM.VEGMASERQLVV
   70-  109 (63.46/41.16)	GPYWTAIATE....YVEKIVRSFCSTELSGQkLAGVPPELALVV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.45|      20|      49|     480|     499|       2
---------------------------------------------------------------------------
  480-  499 (32.68/19.11)	GSFGSNTSTVSGNSNIAVSS
  531-  550 (32.77/19.18)	GGIGTNQNMINNLGTTAISS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.78|      22|      34|     162|     183|       3
---------------------------------------------------------------------------
  162-  183 (39.43/23.87)	ILQGSPSNSQNHQNRELQKH.CL
  197-  219 (33.35/19.08)	VYRPSVQSSDHKKSNEATKEsCL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.45|      21|     145|     305|     327|       4
---------------------------------------------------------------------------
  305-  325 (38.29/19.21)	MDTAPATTVPGPPSNASPSVN
  329-  349 (34.15/11.29)	MGRQPTANVKVEPTTIPPMVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.14|      16|      16|     402|     417|       8
---------------------------------------------------------------------------
  402-  417 (28.57/18.08)	QVRPGGPANGSILNNL
  419-  434 (29.58/19.02)	QHRHSLTAATSMGPNM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15030 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ALSHPLPGNLVPNHTITKMDTAPATTVPGPPSNASPSVNGTMMGRQPTANVKVEPTTIPPMVSQPAFSHMTPISNVASQG
2) IGTNQNMINNLGTTAISSTPTMMPTPGMVQQTGVN
3) MQTSSPLIISQETNVANEILQEHKPLVNPIQQQVRPGGPANGSILNNLSQHRHSLTAATSMGPNMGATPIQVHMSNM
287
533
370
366
567
446










Molecular Recognition Features






MoRF SequenceStartStop




1) KYVKIWE
2) NPHFTHKKRKRKPTLSKGRCW
592
2
598
22