<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15029

Description Uncharacterized protein
SequenceENPHFTHKKRKRKPTLSKGRCWPPVGEENSSGFARERPRGFVEGALPAMVEGMASERQLVVVVEGTAALGPYWTAIATEYVEKIVRSFCSTELSGQKLAGVPPELALVVFHTHGPYSAFVVQRSGWTKDMDAFLSWLSGISFSGGGFSGAAICEGLAEALMILQGSPSNSQNHQNRELQKHCLLVAASNPYPLPTPVYRPSVQSSDHKKSNEATKESCLADAEAVAVSFAQCSVSLSVVSPKQLPTLKAIYNAGKRNPQASDPSVDHAKTPHFLVLLSESFMEARTALSHPLPGNLVPNHTITKMDTAPATTVPGPPSNASPSVNGTMMGRQPTANVKVEPTTIPPMVSQPAFSHMTPISNVASQGISAMQTSSPLIISQETNVANEILQEHKPLVNPIQQQVRPGGPANGSILNNLSQHRHSLTAATSMGPNMGATPIQVHMSNMLSSGMTSTPAVISSISGTVQPIGAQQLVQNTALGSFGSNTSTVSGNSNIAVSSSLANIQSNMAMGQSVPSMAQGGLMAGSQSGQGGIGTNQNMINNLGTTAISSTPTMMPTPGMVQQTGVNALSVNNSSAMNMPMPQHPNGQQPSKYVKIWEGTLSGQRQGQPVFICKLEGYRSGTASDALASDWPETMQIVRLIAQEHMNNKQYVGKADFLVFRTLNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAGRLIGMLFPGDMVVFKPQVSTQQPQMQPQQQQQLQQQQHQIQQQQQQLQQLQQQQLQQHQMQMQPQGQQLQQQQQMQQMQQQQQQMQQMQHQQQQQQIQQQQQMQQQQQQQQQQMQQMQQQQQQPQQLQQQPQMVGTGMGQQQFMQGHGRAVQMMQGKIAPQGPGNMSGGGYLS
Length870
PositionUnknown
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.04
Grand average of hydropathy-0.484
Instability index53.01
Isoelectric point9.12
Molecular weight94281.81
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15029
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     246.41|      27|      27|     767|     793|       1
---------------------------------------------------------------------------
  718-  739 (38.58/ 8.52)	.QQPQM.QP..QQQQQLQQQQ.HQIQQ..
  740-  765 (47.73/12.28)	.QQQQL.QQLQQQQLQQHQMQ.MQPQGQQ
  767-  793 (63.02/18.56)	QQQQQM.QQMQQQQQQMQQMQ.HQQQQQQ
  795-  822 (56.20/15.76)	QQQQQMqQQQQQQQQQMQQMQ.QQQQQPQ
  825-  850 (40.89/ 9.47)	QQQPQM.VGTGMGQQQF..MQgHGRAVQM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     180.17|      40|      41|     480|     519|       2
---------------------------------------------------------------------------
  366-  410 (34.36/13.67)	GIS..AMQ........TSSpliISQETNV.....................AneilqehkplVNP..........IQQQVRPGG..P...AN
  411-  479 (34.24/13.58)	GSI..LNNlsqhrhslTAA...TSMGPNMgatpiqvhmsnmlssgmtstpA..........VISSISG......TVQPIGAQQLVQNT.AL
  480-  519 (70.82/38.10)	GSF..GSN........TST...VSGNSNI.....................A..........VSSSLAN......IQSNMAMGQSVPSM.AQ
  520-  563 (40.75/17.95)	GGLmaGSQ...............SGQGGI.....................G..........TNQNMINnlgttaISSTPTMMPT.PGMvQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     123.69|      42|      50|      25|      74|       3
---------------------------------------------------------------------------
   22-   72 (55.81/49.54)	WPpVGEEnssgFARERPRGFVEGALPAM.VEGMASErqLVVVVEGTAalGPY
   73-  116 (67.88/38.11)	WTaIATE....YVEKIVRSFCSTELSGQkLAGVPPE..LALVVFHTH..GPY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.76|      15|      18|     587|     603|       4
---------------------------------------------------------------------------
  587-  603 (19.44/20.82)	GQqPSKYVKIwEGTLSG
  607-  621 (30.32/17.92)	GQ.PVFICKL.EGYRSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.45|      25|      41|     297|     321|       5
---------------------------------------------------------------------------
  297-  321 (47.99/31.06)	VPNHTITKMDTAPATTVPGPPSN.AS
  339-  364 (41.47/25.63)	VEPTTIPPMVSQPAFSHMTPISNvAS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15029 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ALSHPLPGNLVPNHTITKMDTAPATTVPGPPSNASPSVNGTMMGRQPTANVKVEPTTIPPMVSQPAFSHMTPISNVASQG
2) MQTSSPLIISQETNVANEILQEHKPLVNPIQQQVRPGGPANGSILNNLSQHRHSLTAATSMGPNMGATPIQVHMSNM
3) PQQLQQQPQMVGTGMGQQQFMQGHGRAVQMMQGKIAPQGPGNMSGGGYLS
4) QSVPSMAQGGLMAGSQSGQGGIGTNQNMINNLGTTAISSTPTMMPTPGMVQQTGVNAL
287
370
821
512
366
446
870
569










Molecular Recognition Features






MoRF SequenceStartStop




1) PHFTHKKRKRKPTLSKGRCW
3
22