<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15027

Description Uncharacterized protein
SequenceKGRCWPPVGEENSSGFARERPRGFVEGALPAMVEGMASERQLVVVVEGTAALGPYWTAIATEYVEKIVRSFCSTELSGQKLAGVPPELALVVFHTHGPYSAFVVQRSGWTKDMDAFLSWLSGISFSGGGFSGAAICEGLAEALMILQGSPSNSQNHQNRELQKHCLLVAASNPYPLPTPVYRPSVQSSDHKKSNEATKESCLADAEAVAVSFAQCSVSLSVVSPKQLPTLKAIYNAGKRNPQASDPSVDHAKTPHFLVLLSESFMEARTALSHPLPGNLVPNHTITKMDTAPATTVPGPPSNASPSVNGTMMGRQPTANVKVEPTTIPPMVSQPAFSHMTPISNVASQGISAMQTSSPLIISQETNVANEILQEHKPLVNPIQQQVRPGGPANGSILNNLSQHRHSLTAATSMGPNMGATPIQVHMSNMLSSGMTSTPAVISSISGTVQPIGAQQLVQNTALGSFGSNTSTVSGNSNIAVSSSLANIQSNMAMGQSVPSMAQGGLMAGSQSGQGGIGTNQNMINNLGTTAISSTPTMMPTPGMVQQTGVNALSVNNSSAMNMPMPQHPNGQQPSKYVKIWEGTLSGQRQGQPVFICKLEGYRSGTASDALASDWPETMQIVRLIAQEHMNNKQYVGKADFLVFRTLNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAGRLIGMLFPGV
Length690
PositionUnknown
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.05
Grand average of hydropathy-0.148
Instability index42.34
Isoelectric point8.36
Molecular weight72806.03
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15027
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     129.01|      39|      48|       2|      44|       1
---------------------------------------------------------------------------
    2-   44 (65.55/49.61)	GRCWPPVGEEnssgFARERPRGFVEGALPAM.VEGMASERQLVV
   53-   92 (63.46/38.60)	GPYWTAIATE....YVEKIVRSFCSTELSGQkLAGVPPELALVV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.45|      20|      49|     463|     482|       2
---------------------------------------------------------------------------
  463-  482 (32.68/19.54)	GSFGSNTSTVSGNSNIAVSS
  514-  533 (32.77/19.62)	GGIGTNQNMINNLGTTAISS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.78|      22|      34|     145|     166|       3
---------------------------------------------------------------------------
  145-  166 (39.43/20.92)	ILQGSPSNSQNHQNRELQKH.CL
  180-  202 (33.35/16.72)	VYRPSVQSSDHKKSNEATKEsCL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.45|      21|     145|     288|     310|       4
---------------------------------------------------------------------------
  288-  308 (38.29/19.13)	MDTAPATTVPGPPSNASPSVN
  312-  332 (34.15/11.30)	MGRQPTANVKVEPTTIPPMVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.14|      16|      16|     385|     400|       8
---------------------------------------------------------------------------
  385-  400 (28.57/20.60)	QVRPGGPANGSILNNL
  402-  417 (29.58/21.68)	QHRHSLTAATSMGPNM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15027 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ALSHPLPGNLVPNHTITKMDTAPATTVPGPPSNASPSVNGTMMGRQPTANVKVEPTTIPPMVSQPAFSHMTPISNVASQG
2) MQTSSPLIISQETNVANEILQEHKPLVNPIQQQVRPGGPANGSILNNLSQHRHSLTAATSMGPNMGATPIQVHMSNM
3) QSVPSMAQGGLMAGSQSGQGGIGTNQNMINNLGTTAISSTPTMMPTPGMVQQTGVNAL
270
353
495
349
429
552










Molecular Recognition Features






MoRF SequenceStartStop




NANANA