<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15026

Description Uncharacterized protein
SequenceMDAFLSWLSGISFSGGGFSGAAICEGLAEALMILQGSPSNSQNHQNRELQKHCLLVAASNPYPLPTPVYRPSVQSSDHKKSNEATKESCLADAEAVAVSFAQCSVSLSVVSPKQLPTLKAIYNAGKRNPQASDPSVDHAKTPHFLVLLSESFMEARTALSHPLPGNLVPNHTITKMDTAPATTVPGPPSNASPSVNGTMMGRQPTANVKVEPTTIPPMVSQPAFSHMTPISNVASQGISAMQTSSPLIISQETNVANEILQEHKPLVNPIQQQVRPGGPANGSILNNLSQHRHSLTAATSMGPNMGATPIQVHMSNMLSSGMTSTPAVISSISGTVQPIGAQQLVQNTALGSFGSNTSTVSGNSNIAVSSSLANIQSNMAMGQSVPSMAQGGLMAGSQSGQGGIGTNQNMINNLGTTAISSTPTMMPTPGMVQQTGVNALSVNNSSAMNMPMPQHPNGQQPSKYVKIWEGTLSGQRQGQPVFICKLEGYRSGTASDALASDWPETMQIVRLIAQEHMNNKQYVGKADFLVFRTLNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAGRLIGMLFPGDMVVFKPQVSTQQPQMQPQQQQQLQQQQHQIQQQQQQLQQLQQQQLQQHQMQMQPQGQQLQQQQQMQQMQQQQQQMQQMQHQ
Length659
PositionUnknown
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.03
Grand average of hydropathy-0.383
Instability index51.59
Isoelectric point8.67
Molecular weight70711.39
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15026
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     145.99|      37|      37|     585|     621|       1
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  584-  620 (72.82/21.41)	PQVSTQQPQMQPQQQQ.QLQQQQHQIQQQQQQLQQLQQ
  621-  658 (73.17/21.54)	QQLQQHQMQMQPQGQQlQQQQQMQQMQQQQQQMQQMQH
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.17|      17|      20|     230|     249|       2
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  168-  184 (24.07/ 6.08)	VPNHTITKMDTAPATTV
  233-  249 (27.10/15.49)	VASQGISAMQTSSPLII
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.26|      20|      49|     351|     370|       3
---------------------------------------------------------------------------
  351-  370 (32.34/15.25)	GSFGSNTSTVSGNSNIAVSS
  402-  421 (29.92/13.54)	GGIGTNQNMINNLGTTAISS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.15|      23|      28|     284|     310|       5
---------------------------------------------------------------------------
  284-  307 (37.21/27.89)	ILNNLSQHRHSLTAATS.....MGPnMGA
  314-  341 (34.94/13.85)	MSNMLSSGMTSTPAVISsisgtVQP.IGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.76|      15|      19|     458|     474|       8
---------------------------------------------------------------------------
  458-  474 (19.44/21.80)	GQqPSKYVKIwEGTLSG
  478-  492 (30.32/18.82)	GQ.PVFICKL.EGYRSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.84|      17|      35|      38|      54|      10
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   38-   54 (32.99/24.32)	PS.NSQNHQ..NRELQKHCL
   71-   90 (21.85/13.16)	PSvQSSDHKksNEATKESCL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15026 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ALSHPLPGNLVPNHTITKMDTAPATTVPGPPSNASPSVNGTMMGRQPTANVKVEPTTIPPMVSQPAFSHMTPISNVASQG
2) MQTSSPLIISQETNVANEILQEHKPLVNPIQQQVRPGGPANGSILNNLSQHRHSLTAATSMGPNMGATPIQVHMSNM
3) QSVPSMAQGGLMAGSQSGQGGIGTNQNMINNLGTTAISSTPTMMPTPGMVQQTGVNAL
158
241
383
237
317
440










Molecular Recognition Features






MoRF SequenceStartStop




NANANA