<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15020

Description Uncharacterized protein
SequenceMDAFLSWLSGISFSGGGFSGAAICEGLAEALMILQGSPSNSQNHQNRELQKHCLLVAASNPYPLPTPVYRPSVQSSDHKKSNEATKESCLADAEAVAVSFAQCSVSLSVVSPKQLPTLKAIYNAGKRNPQASDPSVDHAKTPHFLVLLSESFMEARTALSHPLPGNLVPNHTITKMDTAPATTVPGPPSNASPSVNGTMMGRQPTANVKVEPTTIPPMVSQPAFSHMTPISNVASQGISAMQTSSPLIISQETNVANEILQEHKPLVNPIQQQVRPGGPANGSILNNLSQHRHSLTAATSMGPNMGATPIQVHMSNMLSSGMTSTPAVISSISGTVQPIGAQQLVQNTALGSFGSNTSTVSGNSNIAVSSSLANIQSNMAMGQSVPSMAQGGLMAGSQSGQGGIGTNQNMINNLGTTAISSTPTMMPTPGMVQQTGVNALSVNNSSAMNMPMPQHPNGQQPSKYVKIWEGTLSGQRQGQPVFICKLEGYRSGTASDALASDWPETMQIVRLIAQEHMNNKFVAQLAHPFPC
Length531
PositionUnknown
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.04
Grand average of hydropathy-0.196
Instability index45.74
Isoelectric point7.74
Molecular weight55527.29
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15020
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     426.41|      85|      85|     153|     237|       1
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   91-  163 (74.15/28.81)	...................ADAEAVAVSFA.QCSVSLSVVS....PKQLPTLKAIY.NAGKRNPQASDPSVDHAkTPhFLVLLSES.......................................fMEAR..TALSHPL
  164-  247 (133.99/58.05)	PGNLVPNHTITK....MDTAPATTVPGPPS.NASPSVNGTM....MGRQPTANVKV.EPTTIPPMVSQPAFSHM.TP.ISNVASQG.....................................isaM..Q..T..SSPL
  252-  372 (89.46/36.30)	ETN.VANEILQEhkplVNPIQQQVRPGGPA.NGSILNNLSQ....HRHSLTAATSM.G....PNMGATPIQVHM.....SNMLSSGmtstpavissisgtvqpigaqqlvqntalgsfgsntstvsGNSN..IAVSSSL
  376-  437 (76.68/30.05)	QSNMAMGQSVPS....M..AQGGLMAGSQSgQGGIGTNQNM....INNLGTTAISS.TPTMMP....TPGMVQQ.TG.V............................................................
  439-  529 (52.13/18.06)	.....................ALSV......NNSSAMNMPMpqhpNGQQPSKYVKIwEGTLSGQRQGQPVF..I.CK.LEGYRSGT.................asdalasdwpetmqivrliaqehMNNKfvAQLAHPF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15020 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ALSHPLPGNLVPNHTITKMDTAPATTVPGPPSNASPSVNGTMMGRQPTANVKVEPTTIPPMVSQPAFSHMTPISNVASQG
2) MQTSSPLIISQETNVANEILQEHKPLVNPIQQQVRPGGPANGSILNNLSQHRHSLTAATSMGPNMGATPIQVHMSNM
3) QSVPSMAQGGLMAGSQSGQGGIGTNQNMINNLGTTAISSTPTMMPTPGMVQQTGVNAL
158
241
383
237
317
440










Molecular Recognition Features






MoRF SequenceStartStop




1) YVKIW
464
468