<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15019

Description Uncharacterized protein
SequenceMDAFLSWLSGISFSGGGFSGAAICEGLAEALMILQGSPSNSQNHQNRELQKHCLLVAASNPYPLPTPVYRPSVQSSDHKKSNEATKESCLADAEAVAVSFAQCSVSLSVVSPKQLPTLKAIYNAGKRNPQASDPSVDHAKTPHFLVLLSESFMEARTALSHPLPGNLVPNHTITKMDTAPATTVPGPPSNASPSVNGTMMGRQPTANVKVEPTTIPPMVSQPAFSHMTPISNVASQGISAMQTSSPLIISQETNVANEILQEHKPLVNPIQQQVRPGGPANGSILNNLSQHRHSLTAATSMGPNMGATPIQPIGAQQLVQNTALGSFGSNTSTVSGNSNIAVSSSLANIQSNMAMGQSVPSMAQGGLMAGSQSGQGGIGTNQNMINNLGTTAISSTPTMMPTPGMVQQTGVNALSVNNSSAMNMPMPQHPNGQQPSKYVKIWEGYSSGHDFLLFIFQGTLSGQRQGQPVFICKLEGYRSGTASDALASDWPETMQIVRLIAQEHMNNKQYVGKADFLVFRTLNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAGRLIGMLFPGDMVVFKPQVSTQQPQMQPQQQQQLQQQQHQIQQQQQQLQQLQQQQLQQHQMQMQPQGQQLQQQQQMQQMQQQQQQMQQMQHQQQQQQIQQQQQMQQQQQQQQQQMQQMQQQQQQPQQLQQQPQMVGTGMGQQQFMQGHGRAVQMMQGKIAPQGPGNMSGGGYLS
Length729
PositionUnknown
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.04
Grand average of hydropathy-0.525
Instability index55.52
Isoelectric point8.80
Molecular weight79083.53
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15019
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      78.99|      11|      20|     580|     590|       1
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  627-  636 (26.60/ 6.48)	QQQQMQQMQ.Q
  652-  662 (25.71/ 6.01)	QIQQQQQMQQQ
  663-  673 (26.68/ 6.53)	QQQQQQQMQQM
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     159.07|      35|      36|     578|     613|       2
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  578-  613 (64.37/18.02)	QPQMQPQqQQQLQQQQHQI..QQ..........QQQQLQQLQQQQLQQ
  615-  651 (45.57/ 9.06)	QMQMQPQ.GQQL..........QqqqqmqqmqqQQQQMQQMQHQQQQQ
  675-  708 (49.13/10.35)	QQQQQP...QQLQQQPQMVgtGM..........GQQQFMQGHGRAVQ.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     103.67|      29|      29|     420|     448|       3
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  420-  441 (36.47/14.07)	........S.....AMNMP.........MPQHPNGQQPSKYVKI
  442-  471 (43.35/18.23)	WEGYSSGhD.....FLLFI.........FQGTLSGQRQGQPVFI
  474-  511 (23.86/ 6.43)	LEGYRSG.TasdalASDWPetmqivrliAQEHMNNKQ...YV..
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.02|      20|      50|     325|     344|       4
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  325-  344 (33.20/18.19)	GSFGSNTSTVSGNSNIAVSS
  376-  395 (32.82/17.90)	GGIGTNQNMINNLGTTAISS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      87.34|      22|      22|     241|     262|       5
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  176-  197 (31.90/14.84)	MDTAPATTVPGP........PSNASPSVNG
  212-  237 (19.77/ 6.16)	.PTTIPPMVSQPafshmtpiSNVAS...QG
  241-  262 (35.67/17.54)	MQTSSPLIISQE........TNVANEILQE
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      21.81|       7|      62|      71|      80|       6
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   71-   80 ( 8.38/11.67)	PSVqssDHKK
  134-  140 (13.43/ 6.23)	PSV...DHAK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15019 with Med25 domain of Kingdom Viridiplantae
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