<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15018

Description Uncharacterized protein
SequenceMEARTALSHPLPGNLVPNHTITKMDTAPATTVPGPPSNASPSVNGTMMGRQPTANVKVEPTTIPPMVSQPAFSHMTPISNVASQGISAMQTSSPLIISQETNVANEILQEHKPLVNPIQQQVRPGGPANGSILNNLSQHRHSLTAATSMGPNMGATPIQVHMSNMLSSGMTSTPAVISSISGTVQPIGAQQLVQNTALGSFGSNTSTVSGNSNIAVSSSLANIQSNMAMGQSVPSMAQGGLMAGSQSGQGGIGTNQNMINNLGTTAISSTPTMMPTPGMVQQTGVNALSVNNSSAMNMPMPQHPNGQQPSKYVKIWEGTLSGQRQGQPVFICKLEGYRSGTASDALASDWPETMQIVRLIAQEHMNNKQYVGKADFLVFRTLNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAGRLIGMLFPGDMVVFKPQVSTQQPQMQPQQQQQLQQQQHQIQQQQQQLQQLQQQQLQQHQMQMQPQGQQLQQQQQMQQMQQQQQQMQQMQHQQQQQQIQQQQQMQQQQQQQQQQMQQMQQQQQQPQQLQQQPQMVGTGMGQQQFMQGHGRAVQMMQGKIAPQGPGNMSGGGYLS
Length589
PositionUnknown
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.03
Grand average of hydropathy-0.605
Instability index57.95
Isoelectric point9.55
Molecular weight63964.71
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15018
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     239.08|      36|      36|     438|     473|       1
---------------------------------------------------------------------------
  438-  468 (60.92/12.38)	......QPQMQPQ...QQQQLQQQQ..HQIQQQQQQLQQLQQ
  469-  506 (67.47/14.57)	QQLQQhQMQMQPQ....GQQLQQQQqmQQMQQQQQQMQQMQH
  507-  535 (64.90/13.71)	QQQQQ.Q....IQ...QQQQMQQQQ.....QQQQQQMQQMQQ
  541-  574 (45.79/ 7.34)	QQLQQ.QPQMVGTgmgQQQFMQGHG..RAVQMMQGKI.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     362.22|      64|      64|     144|     207|       2
---------------------------------------------------------------------------
   29-   69 (45.10/11.30)	.ATTVPG...PPSNASP.S.VNG.TMM....................GR....QPT.ANVKVEPTT...........IPPMV..SQ...................
   71-  138 (56.88/15.98)	.AFSHM.........TPI......SNVAS.................QGIsamqTSSPLIISQETNVaneilqehkplVNPI....QQQVRpgGPANGSILNNLSQ
  144-  207 (115.20/39.16)	TAATSMG...PNMGATPIQ.VHM.SNMLS.................SGM....TSTPAVISSISGT...........VQPIG..AQQLVQ..NTALGSFGSNTST
  215-  263 (52.09/14.08)	AVSSSLAniqSNMA........M.GQSVP.................S.M....AQGGLMAGSQSGQ............GGIG..TNQNMI..NN.LG........
  264-  294 (48.79/12.77)	TTAISST...PTMMPTP..............................GM............................VQQTG..VNAL...........SVNNSS
  297-  367 (44.16/10.92)	NMPMPQH...PN.GQQPSKyVKIwEGTLSgqrqgqpvficklegyrSG.....TASDALASDWPET...........MQIVRliAQEHMN..N............
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15018 with Med25 domain of Kingdom Viridiplantae
Unable to open file!