<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15014

Description Uncharacterized protein
SequenceMPSRPLTLEHGIADGNKPFQLAPSSMLPAHLVRSSPAIEGLGKAITVGSDCAPRKRPLSDFLLDLPSLQGLKSSEPNKRRKISESAKSSLTLQAYSSSSQSGTSLTHGNILAERSNCVPATVYASVLLHVIRHCSLCIKHAQLTAQMDSCAIPYVEEVGMRSPSSNLWFRLPFAQDDSWKHICLRLGKAGSMSWDVRINDPHFKELWELNGGSTSTPWGVGVRIANTSEMDSHISFDADGVVLTYSTVDADSVKRLVSDLQRLANARVFARGMRRLIGVKLDDKLDDNHISVGIKSQSVNKGHNDADRLSEQMGKPFRIEAVGLMSFWFSYGHMPMVHFVVEWETAKEGCTMHVSPDQLWPHTKFLEDFVNGGEVASFLDCIRLTAGPLLALGGAIRPARMPVTVSTGYSSMSKQTNNVPSQGPLANGSSATTMHHASAPSNGTAHLGGHTLHTAAMLSAAGRGGPGLVPSSLLPFDVSVVLRGPYWIRIIYRKKFSVDMRCFAGDQVWLQPATPPKGGPSVGGSLPCPQFRPFIMEHVAQGLNALEPAFMNATQPGPHLNTSAGAPQSAPIANRLNATPGGAMSRPTSSVANHVAASLSRAGNAMLSSSGLASGIGGASVRLTPGTGLPVHMKGELNTAFIGLGDDGGYGGGWVPLAALKKVLRGILKYLGVLWLFAQLPELLKEILGSILKDNEGALLNLDQEQPALRFYVGGYVFAVS
Length721
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.07
Grand average of hydropathy-0.074
Instability index51.08
Isoelectric point9.02
Molecular weight77006.31
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15014
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      84.89|      18|      19|     420|     437|       1
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  398-  415 (22.55/12.72)	PARMPVtvSTGYSS..MSKQ
  420-  437 (33.72/23.61)	PSQGPL..ANGSSATTMHHA
  440-  455 (28.62/18.64)	PSNGTA..HLG..GHTLHTA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     105.94|      26|      29|     611|     637|       2
---------------------------------------------------------------------------
  460-  484 (23.29/ 7.46)	..A..AGRGGPG..LVPSSLLPfdvsVVLRG..
  611-  637 (43.02/23.37)	GLA..SGIGGASVrLTPGTGLP....VHMKGEL
  643-  668 (39.63/17.46)	GLGddGGYGGGWV...PLAALK....KVLRGIL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.03|      23|      23|     176|     198|       3
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  176-  198 (44.58/24.03)	DDSWKHICLRLGKAGSMSW..DVRI
  200-  224 (40.45/21.17)	DPHFKELWELNGGSTSTPWgvGVRI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.57|      12|      28|     292|     303|       4
---------------------------------------------------------------------------
  292-  303 (21.42/10.62)	VGIKSQSVNKGH
  322-  333 (25.15/13.54)	VGLMSFWFSYGH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.37|      21|      23|      54|      74|       5
---------------------------------------------------------------------------
   54-   74 (34.69/25.72)	RKRPLSDFLLDLPSLQGLKSS
   78-   98 (30.68/21.76)	KRRKISESAKSSLTLQAYSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.90|      24|     146|     350|     381|       6
---------------------------------------------------------------------------
  350-  381 (34.29/38.42)	CtmhVSPDQLW..PHTKflEdfvNGG.EVASFLDC
  502-  528 (41.61/21.85)	C...FAGDQVWlqPATP..P...KGGpSVGGSLPC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     141.75|      34|     147|     530|     565|       7
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    4-   34 (36.04/14.47)	..RPLTLEHgIADGNKPfqLAPSSM.....LPA.HLVRS
  530-  563 (63.56/39.74)	QFRPFIMEH.VAQGLNA..LEPAFMN..ATQPGPHLNTS
  568-  598 (42.15/18.75)	QSAP......IANRLNA..TPGGAMSrpTSSVANHVAAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.41|      13|      32|     107|     119|       9
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  107-  119 (24.29/17.18)	HGNILAERSNC.VP
  140-  153 (20.13/12.97)	HAQLTAQMDSCaIP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15014 with Med14 domain of Kingdom Viridiplantae
Unable to open file!