<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15013

Description Uncharacterized protein
SequenceMVMGFPQCANAYHLLMQLDKDFRPVFHLLETQSDASNKFNANIDAKEAMRVNKIDIGQMEKIKYEKNSNSFDAKLHSLQSIENCDNMMDNELLIQNSVDPLPLLPACSPSFSSLVDETFECEHGSSLPSASPVRSLSLGPQGISTRAISPMQDGALSHAQANNTSIVRPGVGVNSYFPTSLRHLQSTNAFSSSNPVRNSSAIKLSNSKSNHDLSSLSSPSEHGIADGNKPFQLAPSSMLPAHLVRSSPAIEGLGKAITVGSDCAPRKRPLSDFLLDLPSLQGLKSSEPNKRRKISESAKSSLTLQAYSSSSQSGTSLTHGNILAERSNCVPATVYASVLLHVIRHCSLCIKHAQLTAQMDSCAIPYVEEVGMRSPSSNLWFRLPFAQDDSWKHICLRLGKAGSMSWDVRINDPHFKELWELNGGSTSTPWGVGVRIANTSEMDSHISFDADGVVLTYSTVDADSVKRLVSDLQRLANARVFARGMRRLIGVKLDDKLDDNHISVGIKSQSVNKGHNDADRLSEQMGKPFRIEAVGLMSFWFSYGHMPMVHFVVEWETAKEGCTMHVSPDQLWPHTKFLEDFVNGGEVASFLDCIRLTAGPLLALGGAIRPARMPVTVSTGYSSMSKQTNNVPSQGPLANGSSATTMHHASAPSNGTAHLGGHTLHTAAMLSAAGRGGPGLVPSSLLPFDVSVVLRGPYWIRIIYRKKFSVDMRCFAGDQVWLQPATPPKGGPSVGGSLPCPQFRPFIMEHVAQGLNALEPAFMNATQPGPHLNTSAGAPQSAPIANRLNATPGGAMSRPTSSVANHVAASLSRAGNAMLSSSGLASGIGGASVRLTPGTGLPVHMKGELNTAFIGLGDDGGYGGGWVPLAALKKVLRGILKYLGVLWLFAQLPELLKEILGSILKDNEGALLNLDQEQPALRFYVGGYVFAVSVHRVQLLLQVLSVKRFHHQQQQQQAQSNAQEELTSAEINEICDYFSRRVASEPYDASRVASFITLLTLPISVLREFLKLITWKKGFSQAHGDIATAQRARIELCLENHSGSASDDRAESSLAKSNIHHDRAHSSVEFALTFVLDHALIPHMNVAGGAAWLPYCVSVRLRYSFGDNSHISFLAINGSHGGRACWLQSEDWDRCKQKVARAVETVNGTPAVAEPGQGRLRMVAEMIQKQLQLCLQQLRDGPLSAGSTAS
Length1190
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.06
Grand average of hydropathy-0.169
Instability index51.45
Isoelectric point8.36
Molecular weight128543.69
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15013
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     632.69|     153|     159|     528|     686|       1
---------------------------------------------------------------------------
  187-  239 (26.50/ 8.52)	.................................................................................................................................................................TNAFSSSNPVRN.SSAIKL......SNSKSN......HDLSSLSspsehgiADGNKPFQLAPSSML
  365-  527 (153.46/98.35)	PY.VEEVGMRSpssnLWF.....R...LP...FAQDdsW...KHICLRLGKAGSMsWdvrindPHFKELWEL.NGGSTSTPWgvgvriantsemdshisfdadgvvltystvdaDSVKRL.......VSDLQRLANARVFARgMR...RLI..GVKLDDKLDDNHISVG..IKSQSVNKGHN...DADRLSEQMG...............................K
  528-  686 (264.13/193.40)	PFRIEAVGLMS....FWFS..YGH...MPMVHFVVE..WetAKEGCTMHVSPDQL.W......PHTKFLEDFvNGGEVASFL................................DCIRLT.......AGPLLALGGAIRPAR.MP...VTVSTGYSSMSKQTNNVPSQGPLANGSSATTMHHASAPSNGTAHLGGhtlHTAAMLS.......AAGRGGPGLVPSSLL
  687-  824 (188.59/122.98)	PFDVSVVLRGP....YWIRiiYRKkfsVDMRCF........AG.........DQV.W......LQPATPPK..GGPSVGGSL................................PCPQFRpfimehvAQGLNALEPAFMNAT.QPgphLNTSAG..........APQSAPIANRLNATPGGAMSRPTSSVAN......HVAASLS..........RAGNAMLSSSGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.18|      14|      16|     126|     141|       2
---------------------------------------------------------------------------
  104-  117 (25.83/ 9.80)	LPACSPSFS.SLVDE
  127-  141 (20.35/15.15)	LPSASPVRSlSLGPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      82.30|      20|      23|     862|     881|       3
---------------------------------------------------------------------------
  829-  850 (22.96/ 9.62)	..GGASV.rltPGTGLPVHMKGELN
  862-  881 (36.85/19.61)	Y.GGGWV....PLAALKKVLRGILK
  882-  905 (22.48/ 9.27)	YlGVLWLfaqlP.ELLKEILGSILK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.82|      19|      27|     248|     272|       4
---------------------------------------------------------------------------
  248-  272 (28.32/26.09)	PAIEGLgkaitvGSDCAPRKRPLSD
  278-  296 (32.49/16.93)	PSLQGL......KSSEPNKRRKISE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.54|      19|      25|     142|     160|       5
---------------------------------------------------------------------------
  142-  160 (32.43/18.36)	GISTRAISP......MQDGALSHAQ
  161-  185 (27.10/14.17)	ANNTSIVRPgvgvnsYFPTSLRHLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     143.85|      49|     734|     298|     352|       6
---------------------------------------------------------------------------
  298-  352 (64.13/68.49)	AKSSLTLQAYSSSS...QSGTSLTHGNILAERSNcvPATVYAsvLLHVIRHcSLcIKH
 1032- 1083 (79.73/54.92)	ARIELCLENHSGSAsddRAESSLAKSNIHHDRAH..SSVEFA..LTFVLDH.AL.IPH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.60|      19|     663|     432|     450|       7
---------------------------------------------------------------------------
  432-  450 (34.16/25.24)	VGVRIANTSEMDSHISFDA
 1097- 1115 (34.43/25.50)	VSVRLRYSFGDNSHISFLA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15013 with Med14 domain of Kingdom Viridiplantae
Unable to open file!