<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15012

Description Uncharacterized protein
SequenceMPSRPLTLSLSSPSEHGIADGNKPFQLAPSSMLPAHLVRSSPAIEGLGKAITVGSDCAPRKRPLSDFLLDLPSLQGLKSSEPNKRRKISESAKSSLTLQAYSSSSQSGTSLTHGNILAERSNCVPATVYASVLLHVIRHCSLCIKHAQLTAQMDSCAIPYVEEVGMRSPSSNLWFRLPFAQDDSWKHICLRLGKAGSMSWDVRINDPHFKELWELNGGSTSTPWGVGVRIANTSEMDSHISFDADGVVLTYSTVDADSVKRLVSDLQRLANARVFARGMRRLIGVKLDDKLDDNHISVGIKSQSVNKGHNDADRLSEQMGKPFRIEAVGLMSFWFSYGHMPMVHFVVEWETAKEGCTMHVSPDQLWPHTKFLEDFVNGGEVASFLDCIRLTAGPLLALGGAIRPARMPVTVSTGYSSMSKQTNNVPSQGPLANGSSATTMHHASAPSNGTAHLGGHTLHTAAMLSAAGRGGPGLVPSSLLPFDVSVVLRGPYWIRIIYRKKFSVDMRCFAGDQVWLQPATPPKGGPSVGGSLPCPQFRPFIMEHVAQGLNALEPAFMNATQPGPHLNTSAGAPQSAPIANRLNATPGGAMSRPTSSVANHVAASLSRAGNAMLSSSGLASGIGGASVRLTPGTGLPVHMKGELNTAFIGLGDDGGYGGGWVPLAALKKVLRGILKYLGVLWLFAQLPELLKEILGSILKDNEGALLNLDQEQPALRFYVGGYVFAVSVHRVQLLLQVLSVKRFHHQQQQQQAQSNAQEELTSAEINEICDYFSRRVASEPYDASRVASFITLLTLPISVLREFLKLITWKKGFSQAHGDIATAQRARIELCLENHSGSASDDRAESSLAKSNIHHDRAHSSVEFALTFVLDHALIPHMNVAGGAAWLPYCVSVRLRYSFGDNSHISFLAINGSHGGRACWLQSEDWDRCKQKVARAVETVNGTPAVAEPGQGRLRMVAEMIQKQLQLCLQQLRDGPLSAGSTAS
Length984
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.07
Grand average of hydropathy-0.121
Instability index52.09
Isoelectric point8.84
Molecular weight106071.81
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15012
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      78.47|      17|      19|     426|     443|       1
---------------------------------------------------------------------------
  404-  421 (22.31/10.96)	PARMPVtvSTGYSS..MSKQ
  426-  443 (27.70/20.89)	PSQGPL..ANGSSAtTMHHA
  446-  461 (28.45/16.28)	PSNGTA..HLGGH..TLHTA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.19|      24|      30|     617|     643|       3
---------------------------------------------------------------------------
  617-  643 (39.14/29.89)	GLA..SGIGGASVrltPGTGLPVHMKGEL
  649-  674 (40.06/22.72)	GLGddGGYGGGWV...PLAALKKVLRGIL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      55.29|      12|      36|     163|     174|       4
---------------------------------------------------------------------------
  163-  174 (22.04/12.20)	EVGMR..SPS.SNLW
  187-  200 (16.41/ 7.16)	HICLRlgKAG.SMSW
  201-  213 (16.84/ 7.55)	DVRIN..DPHfKELW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.14|      23|     310|     475|     503|       5
---------------------------------------------------------------------------
  479-  503 (34.37/32.71)	LLPFDVSvVLRGpYWIRIIYRKKFS
  792-  814 (40.77/18.71)	LLTLPIS.VLRE.FLKLITWKKGFS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.57|      12|      29|     298|     309|       6
---------------------------------------------------------------------------
  298-  309 (21.42/11.16)	VGIKSQSVNKGH
  328-  339 (25.15/14.26)	VGLMSFWFSYGH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.15|      21|      23|      60|      80|       7
---------------------------------------------------------------------------
   60-   80 (35.08/22.97)	RKRPLSDFLLDLPSLQGLKSS
   84-  104 (31.07/19.43)	KRRKISESAKSSLTLQAYSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      99.80|      25|      32|     545|     569|       9
---------------------------------------------------------------------------
  516-  531 (21.34/ 8.54)	.......LQPA..T..PPKGGPSVGGS
  545-  569 (44.42/26.46)	VAQGLNALEPAFMN..ATQPGPHLNTS
  578-  604 (34.03/18.39)	IANRLNATPGGAMSrpTSSVANHVAAS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15012 with Med14 domain of Kingdom Viridiplantae
Unable to open file!