<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14998

Description Uncharacterized protein
SequenceMGRTTTSWADPRSLARPMRPGHVSDPPMAAKEGDGTGAGTVVGLALGGSKSSAYVLQWALANFVRDDAAPPAFKLIHVLIPVLAVPTPPPVKNRLPIDDVSSDISVDYLHGLWIKKQEMLRGCKDTCDEYKVEAQVLLVEGSDVADTISSLVVQYQIQILVVGNPSSKNPFTGSSSTSRTTTKICKSVPSFCTAYVVSKDGLSSIYASESESGSPSGSLVPKGNSESSETEEFITDSSRSDLDDSSGQGLPPSNLASEKLESCSSVEGFTLYDYLSGNASVYPDKDRRITPSTGSERSISSQSQGSDKVLTKESSLLGSMLSDNKGSDKVPAKENSLLGLMLSDKKNDVSTELEKLKLELGHIQGAYKLVQDESADASHQVNELATRRMEVEAQLSEIQARVDKANDDVLEQTAQRLVAEEATTQVKHLTRLEVIQKNRLLAKASKDADRKARLEKLLVLQDDSYWTFTWEEIDNATASLSESLKIGTGSNGTVYKGHLNHLNVAIKVLHCNDSSSTKHFNQELEVLSRIRHPHLVMLLGACPDKGCLVYEYMENGSLADRLQLKKGTPPIPWFDRFRIAWEIGSALVFLHSAKPSPIIHRDLKPENVLLNSNLVSKIGDVGLSTLMPPKETLSNRTVFKKTGLAGTLFYLDPEYQRSGQVSVKSDTYALGMVILELLTARSPIGLPELVERAVEGGRITDVLDEGAGEWPVKEAHELAQLGLKCLEMRSKDRPDLKSVVVVELERLKHITAGMLELARALPGLPGPPPSHFMCPILKRVMKDPVLAADGYSYERSAMEMWLCDMDTSPVTKARLRDKKLVANLSLLSAITSWAARGGGF
Length840
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.05
Grand average of hydropathy-0.279
Instability index37.26
Isoelectric point5.89
Molecular weight91496.10
Publications
PubMed=23075845

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14998
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      71.65|      20|      20|     304|     323|       1
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  265-  314 (19.13/ 7.40)	SVEGFTLYDylsgnasvypdkdrritpstgsersissqsQGSDKVLTKES
  315-  335 (30.33/15.53)	SLLGSMLSD.............................nKGSDKVPAKEN
  336-  374 (22.19/ 9.62)	SLLGLMLSD...........kkndvsteleklklelghiQGAYKLVQDES
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     148.69|      45|      47|     163|     209|       2
---------------------------------------------------------------------------
  163-  209 (75.31/50.75)	GNPSSKNPFTGSSSTSRTTTKICKSvpSFCTAYVVSKDGL.SSIYASE
  213-  258 (73.38/43.27)	GSPSGSLVPKGNSESSETEEFITDS..SRSDLDDSSGQGLpPSNLASE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.23|      18|      20|     415|     433|       3
---------------------------------------------------------------------------
  415-  433 (25.08/19.73)	QRLVAEeATTQVKHLTRLE
  438-  455 (28.16/17.23)	NRLLAK.ASKDADRKARLE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      71.38|      14|     740|      14|      27|       6
---------------------------------------------------------------------------
   14-   27 (28.42/20.85)	LARPMRPGHVSDPP
  757-  769 (24.64/16.81)	LARAL.PGLPGPPP
  772-  784 (18.32/10.04)	FMCPILKRVMKDP.
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14998 with Med32 domain of Kingdom Viridiplantae
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