<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14979

Description Uncharacterized protein
SequenceMSILYILDTCCDLASATRFLVWLLAKIRGGQVGRSVAHMKNRDNHVCQVGEAFVFSSLLRYENILLATDLLPEVLNASTNRNFVLATARHPAPAAFPYTRYFLRKYRDVASVVRWEKNFRTTCDQRLLADLDNGRSIDGDFVSSSGVLGGEEIDDQVRQKLNGRGSRIIPNMKEIVQRQAEEIQRNLKEKKIPAAPKSPSFEKEDSYQIAHDTVLGLVECIRQNGGASPDGDPSAVASAVSAIVVNAGHVIAKHLDFAGEALGDRFSRVFEVALAVEASSAVTAALAPPKVQRNQFQPSSETHDAYGNHTNEPLSTSGKGFVGRAAKLAAAISALVVGAVVHGAVSLERMIAVLKVKDGLEVQQVLRGLRPSTNGASRSSVTFKMDNSIEVLVHWFRILLGNCRTIYDGLIADILGESYVLALSRLQQKLPLSVVFPPAYSIFAMVRWRQYILSREDMQVYQSIANAINDITRHQPFRDICFRNTHQLYDLLAADVGDSEFAAMLETHCSDKNVKQLFVPLRGRLFLNSLVDCKTPAAIQVDGSEPGEAKENELKLLSERLVQSLDTLQPAKFHWQWVELRLLLDEQALAEKLDKAEKSKIPMPILMTLADGLRKLSPNSESFTLSESEKGFTEIILSRLVARPDAAPLYSEVVHLLGKLQESLVVDVKWILQGQDAVLGRKSTRQQLLTIATRRGVPIKAQVWKPWGWSSLLSDVMANRSAKRKLEAAPIEEGEVVDDSADAKRPSKSTLHINKYVTEKAFAELMLPCIDRSSPEFRSIFAGELIKQMGTVSEHIKAISRNGAKQVGLVPSGNDVSSNKSSGRKGIRGGSPNIGRRGTVGNDPTPPSASALQAIVWLRLQFIIRLLQVILADRGMRHTLAPAILSLLASRIIYEDADFPPPPASPIASRREVDSLLEPPMDVLLDRPSESLFERLLCVFHALLGNCKPSWMKSKPVSKPTVRAPSRDFPAFDNEVAVALQSALDHVELPGAIRRRIQAAMPILPPARHPSIHCQPPQLSLAALSPLQSIPSTSGPQQKSTSHSWVPTNISSRSKAVLPPQDPEMEVDPWTLLEDGTSCPSTSSGSNSASGITPDHSNLKACSWLKGAVRVRRTELTYIGSLDDDS
Length1126
PositionKinase
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.06
Grand average of hydropathy-0.165
Instability index49.26
Isoelectric point8.74
Molecular weight123578.18
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14979
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     126.13|      36|      80|     387|     423|       1
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  387-  423 (59.18/46.58)	NSIEVLVHWFRILLG.NCRTIYDGL...IADIlGESYVLAL
  440-  471 (31.84/18.63)	YSIFAMVRWRQYILSrEDMQVYQSIanaINDI.........
  480-  504 (35.10/21.66)	...........ICFR.NTHQLYDLL...AADV.GDSEFAAM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     226.79|      75|     310|     308|     384|       2
---------------------------------------------------------------------------
  308-  384 (115.36/82.13)	NHTNEPLSTSGKGFVGRA.AKLAAAI.SALVVGAVVHGAVSLERMIaVLKVKDGLEVQQVLRGlRPSTNG.....ASRSSVTFK
  619-  700 (111.43/71.02)	NSESFTLSESEKGFTEIIlSRLVARPdAAPLYSEVVHLLGKLQESL.VVDVKWILQGQDAVLG.RKSTRQqlltiATRRGVPIK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.86|      27|      52|    1003|    1034|       3
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 1003- 1034 (43.96/36.78)	ILPPaRHPSIHCQPPQLslaaLSPLQSIPSTS
 1057- 1083 (53.89/31.19)	VLPP.QDPEMEVDPWTL....LEDGTSCPSTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.61|      23|      47|     771|     794|       4
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  771-  794 (35.34/27.57)	DRSSPEfRSIFAG.ELIKQMGTVSE
  819-  842 (37.27/23.54)	NKSSGR.KGIRGGsPNIGRRGTVGN
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.05|      25|     834|      14|      38|       5
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   14-   38 (44.91/36.94)	ASATRFLVWLLAK..IRGGQV...GRSVAH
  849-  878 (35.14/26.99)	ASALQAIVWLRLQfiIRLLQVilaDRGMRH
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     112.68|      37|     582|     127|     167|       7
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  127-  167 (52.26/38.66)	LLADLDNGRSIDGDfVSSSGVLGGEEIDDQVRQKlngRGSR
  712-  748 (60.41/32.52)	LLSDVMANRSAKRK.LEAAPIEEGEVVDDSADAK...RPSK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14979 with Med12 domain of Kingdom Viridiplantae
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