<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14978

Description Uncharacterized protein
SequenceMQRYAGAGNSNSSGFSGGPASAGSRDSSRLDVSPYAPPNLLLFFRRQQQLAPYRLKCDREPLNNKLGPPDFYPQTPNCPEETLTKEYVQSGYKETVEGIEEAREIVLSHISYFCKPDIVGKCKEALKKRLRAINDSRAQKRKAGQVYGVPLSGSLLIKPGVYPEQRACNEDSRRKWAEALSQPNKRLRLLSEHVPHGYRRKSLFDVLTRCNVPLLRATWFVKVTYLNQVRPTSSSISTGASDNQRSNQWTKDVVEYLQQLLDEFSLKEAHLSFKEQPSAGLISGTTQVKLKNEAPSAGGDTEEPLVHFKWWYMVRLVQWHLTEELLVPSVLIEWSCHQLQERDSVEALELLLPIVLGLVETITLSQTYVRMFVEILVKRLSDASAVDNPKRSSISSVIAELLRYMVLAVPDTFVSLDCFPLPSFVAPDVYGRGALLKITGGGEMSSSKRRDVYRYLSCGYAVCSIQRRASDLATLASPNVHARGAAKVVQALDRALVTGNLTMAYSSLFNDLSDALMEERWIKEVSPCLQSSLMWIGTVELSLICSIFFLCEWATCDYRDCRTSPSQNVKLTGRRDLSQIHLAVSILKNKMTEMNKLSRSKSSSRIAVNNIGKGSSLNDASVAATKVGDSSGLRSNGKNEEEKKEKKDIFESPGPLHDIIVCWLDQHEVSSAAGFKRVDVLIIELIRSGVFYPQAYVRQLIISGVTDKNGTLLDMERKRRHHRILKQLPGSSLFDILEEDIVAEQQQLHEVLSTYSSERRLVLSELSSGQSFDASNRGGYTSSSYPRIPSGGTNHGGVPEQVEDVKVLVSSLLCFIYPHSAESEQNETKINFQGSSTSTLTQVDTGEAKIGCEDCMRINGQKLDERASPFQAFPLIQSDEEDVWWVRKGTELQESFKAEPALKSIKQTSRGRAKVVRKTQNLAQLTTAKIEGSQGEASTSHLCESKLSCPHHKPSTDGDNAKDADHTRMTNLAEVGKSLKKLRLLERRSISVWLLKSVRQLVEGNETTACKASNSISSFSSQPEDKTASKWRLGDEELMSILYILDTCCDLASATRFLVWLLAKIRGGQVGRSVAHMKNRDNHVCQVGEAFVFSSLLRYENILLATDLLPEVLNASTNRNFVLATARHPAPAAFPYTRYFLRKYRDVASVVRWEKNFRTTCDQRLLADLDNGRSIDGDFVSSSGVLGGEEIDDQVRQKLNGRGSRIIPNMKEIVQRQAEEIQRNLKEKKIPAAPKSPSFEKEDSYQIAHDTVLGLVECIRQNGGASPDGDPSAVASAVSAIVVNAGHVIAKHLDFAGGNYHGVASIGNSLSFVRHTLHIHISSLCLLKEALGDRFSRVFEVALAVEASSAVTAALAPPKVQRNQFQPSSETHDAYGNHTNEPLSTSGKGFVGRAAKLAAAISALVVGAVVHGAVSLERMIAVLKVKDGLEVQQVLRGLRPSTNGASRSSVTFKMDNSIEVLVHWFRILLGNCRTIYDGLIADILGESYVLALSRLQQKLPLSVVFPPAYSIFAMVRWRQYILSREDMQVYQSIANAINDITRHQPFRDICFRNTHQLYDLLAADVGDSEFAAMLETHCSDKNVKQLFVPLRGRLFLNSLVDCKTPAAIQVDGSEPGEAKENELKLLSERLVQSLDTLQPAKFHWQWVELRLLLDEQALAEKLDKAEKSKIPMPILMTLADGLRKLSPNSESFTLSESEKGFTEIILSRLVARPDAAPLYSEVVHLLGKLQESLVVDVKWILQGQDAVLGRKSTRQQLLTIATRRGVPIKAQVWKPWGWSSLLSDVMANRSAKRKLEAAPIEEGEVVDDSADAKRPSKSTLHINKYVTEKAFAELMLPCIDRSSPEFRSIFAGELIKQMGTVSEHIKAISRNGAKQVGLVPSGNDVSSNKSSGRKGIRGGSPNIGRRGTVGNDPTPPSASALQAIVWLRLQFIIRLLQVILADRGMRHTLAPAILSLLASRIIYEDADFPPPPASPIASRREVDSLLEPPMDVLLDRPSESLFERLLCVFHALLGNCKPSWMKSKPVSKPTVRAPSRDFPAFDNEVAVALQSALDHVELPGAIRRRIQAAMPILPPARHPSIHCQPPQLSLAALSPLQSIPSTSGPQQKSTSHSWVPTNISSRSKAVLPPQDPEMEVDPWTLLEDGTSCPSTSSGSNSASGITPDHSNLKACSWLKGAVRVRRTELTYIGSLDDDS
Length2195
PositionKinase
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.06
Grand average of hydropathy-0.270
Instability index50.88
Isoelectric point8.71
Molecular weight242578.05
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14978
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.36|      14|      48|     421|     434|       1
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  421-  434 (26.54/13.91)	LPSFVAPDVYGRGA
  472-  485 (22.81/10.93)	LATLASPNVHARGA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     250.74|      81|     619|      71|     291|       2
---------------------------------------------------------------------------
  156-  241 (129.45/235.20)	LIKPGV.YPE...QRACNEDSRRKWAEALSQPNKR..LRLLsEHVPhGyrrKSLFDVLTRCNVPLLRATWFVKVTYLNQVRPTSSSISTGAS
  685-  771 (121.29/34.08)	LIRSGVfYPQayvRQLIISGVTDKNGTLLDMERKRrhHRIL.KQLP.G...SSLFDILEEDIVAEQQQLHEVLSTYSSERRLVLSELSSGQS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     113.69|      37|      48|     324|     361|       3
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  324-  361 (58.23/45.06)	ELLVPSvLIEWSCHQLQERDSVEAL..ELLLPIVLGLVET
  374-  412 (55.45/37.76)	EILVKR.LSDASAVDNPKRSSISSViaELLRYMVLAVPDT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     145.31|      46|      79|    1446|    1492|       4
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 1446- 1492 (77.41/60.72)	SRSSVTFKMDNSIEVLVHWFRILLG.............................NCRTIYDGLIADIlGESYVLAL
 1499- 1573 (67.90/47.94)	LPLSVVFPPAYSIFAMVRWRQYILSredmqvyqsianainditrhqpfrdicfrNTHQLYDLLAADV.GDSEFAAM
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.86|      27|      52|    2072|    2103|       5
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 2072- 2103 (43.96/36.23)	ILPPaRHPSIHCQPPQLslaaLSPLQSIPSTS
 2126- 2152 (53.89/30.67)	VLPP.QDPEMEVDPWTL....LEDGTSCPSTS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.01|      38|      79|    1265|    1324|       6
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 1265- 1309 (49.63/47.85)	ASpdgdpSAVASAVSAIVV..NAGHVIAKHLDfAGGNyHGVASIGNS
 1347- 1386 (60.38/51.36)	AS.....SAVTAALAPPKVqrNQFQPSSETHD.AYGN.HTNEPLSTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     202.55|      68|      79|     874|     946|       7
---------------------------------------------------------------------------
  874-  946 (99.48/90.60)	PLIQSDE.EDVWWVRKgTELQESFKaepALKSIKQTSRgRAKVVRKTQNLAQLT....TAKIEGSQGEASTSHLCESK
  954- 1026 (103.07/74.02)	PSTDGDNaKDADHTRM.TNLAEVGK...SLKKLRLLER.RSISVWLLKSVRQLVegneTTACKASNSISSFSSQPEDK
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.36|      18|      47|    1710|    1737|       8
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 1710- 1727 (30.42/10.80)	VARPDAAPLYSEVVHLLG
 1760- 1777 (31.94/21.92)	IATRRGVPIKAQVWKPWG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     112.68|      37|     614|    1165|    1205|       9
---------------------------------------------------------------------------
 1165- 1205 (52.26/44.40)	LLADLDNGRSIDGDfVSSSGVLGGEEIDDQVRQKlngRGSR
 1781- 1817 (60.41/37.32)	LLSDVMANRSAKRK.LEAAPIEEGEVVDDSADAK...RPSK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.15|      28|      52|    1894|    1921|      10
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 1894- 1921 (51.69/34.86)	KGIRGG.SPNI.....GRRGTVGNDPTPPSASAL
 1943- 1976 (43.46/27.88)	RGMRHTlAPAIlsllaSRIIYEDADFPPPPASPI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.11|      10|      16|    1101|    1110|      11
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 1101- 1110 (17.27/12.12)	NILLATDLLP
 1120- 1129 (18.84/14.06)	NFVLATARHP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.52|      24|      52|     776|     804|      12
---------------------------------------------------------------------------
  776-  804 (38.73/35.46)	NRGGYTSSSYPRIPSGGTNHGgvpeqVED
  831-  854 (41.79/25.27)	NFQGSSTSTLTQVDTGEAKIG.....CED
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14978 with Med12 domain of Kingdom Viridiplantae
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