<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14977

Description Uncharacterized protein
SequenceRGTLETHLSFLCYICFFPSFSVLCIGWRLRLHFTPFVVHCFLKALKKRLRAINDSRAQKRKAGQVYGVPLSGSLLIKPGVYPEQRACNEDSRRKWAEALSQPNKRLRLLSEHVPHGYRRKSLFDVLTRCNVPLLRATWFVKVTYLNQVRPTSSSISTGASDNQRSNQWTKDVVEYLQQLLDEFSLKEAHLSFKEQPSAGLISGTTQVKLKNEAPSAGGDTEEPLVHFKWWYMVRLVQWHLTEELLVPSVLIEWSCHQLQERDSVEALELLLPIVLGLVETITLSQTYVRMFVEILVKRLSDASAVDNPKRSSISSVIAELLRYMVLAVPDTFVSLDCFPLPSFVAPDVYGRGALLKITGGGEMSSSKRRDVYRYLSCGYAVCSIQRRASDLATLASPNVHARGAAKVVQALDRALVTGNLTMAYSSLFNDLSDALMEERWIKEVSPCLQSSLMWIGTVELSLICSIFFLCEWATCDYRDCRTSPSQNVKLTGRRDLSQIHLAVSILKNKMTEMNKLSRSKSSSRIAVNNIGKGSSLNDASVAATKVGDSSGLRSNGKNEEEKKEKKDIFESPGPLHDIIVCWLDQHEVSSAAGFKRVDVLIIELIRSGVFYPQAYVRQLIISGVTDKNGTLLDMERKRRHHRILKQLPGSSLFDILEEDIVAEQQQLHEVLSTYSSERRLVLSELSSGQSFDASNRGGYTSSSYPRIPSGGTNHGGVPEQVEDVKVLVSSLLCFIYPHSAESEQNETKINFQGSSTSTLTQVDTGEAKIGCEDCMRINGQKLDERASPFQAFPLIQSDEEDVWWVRKGTELQESFKAEPALKSIKQTSRGRAKVVRKTQNLAQLTTAKIEGSQGEASTSHLCESKLSCPHHKPSTDGDNAKDADHTRMTNLAEVGKSLKKLRLLERRSISVWLLKSVRQLVEGNETTACKASNSISSFSSQPEDKTASKWRLGDEELMSILYILDTCCDLASATRFLVWLLAKIRGGQVGRSVAHMKNRDNHVCQVGEAFVFSSLLRYENILLATDLLPEVLNASTNRNFVLATARHPAPAAFPYTRYFLRKYRDVASVVRWEKNFRTTCDQRLLADLDNGRSIDGDFVSSSGVLGGEEIDDQVRQKLNGRGSRIIPNMKEIVQRQAEEIQRNLKEKKIPAAPKSPSFEKEDSYQIAHDTVLGLVECIRQNGGASPDGDPSAVASAVSAIVVNAGHVIAKHLDFAGGNYHGVASIGNSLSFVRHTLHIHISSLCLLKEALGDRFSRVFEVALAVEASSAVTAALAPPKVQRNQFQPSSETHDAYGNHTNEPLSTSGKGFVGRAAKLAAAISALVVGAVVHGAVSLERMIAVLKVKDGLEVQQVLRGLRPSTNGASRSSVTFKMDNSIEVLVHWFRILLGNCRTIYDGLIADILGESYVLALSRLQQKLPLSVVFPPAYSIFAMVRWRQYILSREDMQVYQSIANAINDITRHQPFRDICFRNTHQLYDLLAADVGDSEFAAMLETHCSDKNVKQLFVPLRGRLFLNSLVDCKTPAAIQVDGSEPGEAKENELKLLSERLVQSLDTLQPAKFHWQWVELRLLLDEQALAEKLDKAEKSKIPMPILMTLADGLRKLSPNSESFTLSESEKGFTEIILSRLVARPDAAPLYSEVVHLLGKLQESLVVDVKWILQGQDAVLGRKSTRQQLLTIATRRGVPIKAQVWKPWGWSSLLSDVMANRSAKRKLEAAPIEEGEVVDDSADAKRPSKSTLHINKYVTEKAFAELMLPCIDRSSPEFRSIFAGELIKQMGTVSEHIKAISRNGAKQVGLVPSGNDVSSNKSSGRKGIRGGSPNIGRRGTVGNDPTPPSASALQAIVWLRLQFIIRLLQVILADRGMRHTLAPAILSLLASRIIYEDADFPPPPASPIASRREVDSLLEPPMDVLLDRPSESLFERLLCVFHALLGNCKPSWMKSKPVSKPTVRAPSRDFPAFDNEVAVALQSALDHVELPGAIRRRIQAAMPILPPARHPSIHCQPPQLSLAALSPLQSIPSTSGPQQKSTSHSWVPTNISSRSKAVLPPQDPEMEVDPWTLLEDGTSCPSTSSGSNSASGITPDHSNLKACSWLKGAVRVRRTELTYIGSLDDDS
Length2114
PositionKinase
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.06
Grand average of hydropathy-0.221
Instability index49.70
Isoelectric point8.80
Molecular weight233907.88
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14977
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.36|      14|      48|     340|     353|       1
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  340-  353 (26.54/17.13)	LPSFVAPDVYGRGA
  391-  404 (22.81/13.51)	LATLASPNVHARGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.05|      18|      75|     561|     578|       2
---------------------------------------------------------------------------
  561-  578 (32.45/18.49)	EKKEKKD.IFES.PG.PLHDI
  635-  655 (19.59/ 8.12)	ERKRRHHrILKQlPGsSLFDI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     145.31|      46|      79|    1365|    1411|       3
---------------------------------------------------------------------------
 1365- 1411 (77.41/58.41)	SRSSVTFKMDNSIEVLVHWFRILLG.............................NCRTIYDGLIADIlGESYVLAL
 1418- 1492 (67.90/46.09)	LPLSVVFPPAYSIFAMVRWRQYILSredmqvyqsianainditrhqpfrdicfrNTHQLYDLLAADV.GDSEFAAM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.86|      27|      52|    1991|    2022|       4
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 1991- 2022 (43.96/37.47)	ILPPaRHPSIHCQPPQLslaaLSPLQSIPSTS
 2045- 2071 (53.89/31.74)	VLPP.QDPEMEVDPWTL....LEDGTSCPSTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.01|      38|      79|    1184|    1243|       5
---------------------------------------------------------------------------
 1184- 1228 (49.63/38.16)	ASpdgdpSAVASAVSAIVV..NAGHVIAKHLDfAGGNyHGVASIGNS
 1266- 1305 (60.38/40.96)	AS.....SAVTAALAPPKVqrNQFQPSSETHD.AYGN.HTNEPLSTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     202.55|      68|      79|     793|     865|       6
---------------------------------------------------------------------------
  793-  865 (99.48/74.13)	PLIQSDE.EDVWWVRKgTELQESFKaepALKSIKQTSRgRAKVVRKTQNLAQLT....TAKIEGSQGEASTSHLCESK
  873-  945 (103.07/60.54)	PSTDGDNaKDADHTRM.TNLAEVGK...SLKKLRLLER.RSISVWLLKSVRQLVegneTTACKASNSISSFSSQPEDK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.14|      33|     786|    1069|    1176|       7
---------------------------------------------------------------------------
  280-  312 (51.00/13.70)	TITLSQTYVRMFVEILVKRLSDASAVDNPKRSS
 1069- 1101 (55.14/117.93)	VVRWEKNFRTTCDQRLLADLDNGRSIDGDFVSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.37|      21|      23|     230|     250|       8
---------------------------------------------------------------------------
  230-  250 (40.27/24.98)	WYMVRLVQWHLTE..ELLVPSVL
  253-  275 (33.11/19.18)	WSCHQLQERDSVEalELLLPIVL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.15|      28|      52|    1813|    1840|       9
---------------------------------------------------------------------------
 1813- 1840 (51.69/30.86)	KGIRGG.SPNI.....GRRGTVGNDPTPPSASAL
 1862- 1895 (43.46/24.68)	RGMRHTlAPAIlsllaSRIIYEDADFPPPPASPI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.36|      18|      50|    1629|    1656|      11
---------------------------------------------------------------------------
 1629- 1646 (30.42/11.75)	VARPDAAPLYSEVVHLLG
 1679- 1696 (31.94/23.74)	IATRRGVPIKAQVWKPWG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.11|      10|      16|    1020|    1029|      13
---------------------------------------------------------------------------
 1020- 1029 (17.27/12.17)	NILLATDLLP
 1039- 1048 (18.84/14.14)	NFVLATARHP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      95.18|      22|      52|     702|     723|      17
---------------------------------------------------------------------------
  702-  723 (39.58/27.38)	SS.....YPRIPSGGTNHGGVPEQVED
  729-  755 (29.25/17.95)	SSllcfiYPHSAESEQNETKINFQGSS
  757-  773 (26.35/15.30)	ST.....LTQVDTGEAKIG.....CED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.49|      31|     797|    1144|    1176|      21
---------------------------------------------------------------------------
 1144- 1176 (49.17/41.45)	LKEKKI..PA..APKS..PSFEKEdsYQIAHDTVLGLVE
 1940- 1976 (40.32/26.33)	MKSKPVskPTvrAPSRdfPAFDNE..VAVALQSALDHVE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14977 with Med12 domain of Kingdom Viridiplantae
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