<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14975

Description Uncharacterized protein
SequenceMQRYAGAGNSNSSGFSGGPASAGSRDSSRLDVSPYAPPNYPLNPRRQQQLAPYRLKCDREPLNNKLGPPDFYPQTPNCPEETLTKEYVQSGYKETVEGIEEAREIVLSHISYFCKPDIVGKCKEALKKRLRAINDSRAQKRKAGQVYGVPLSGSLLIKPGVYPEQRACNEDSRRKWAEALSQPNKRLRLLSEHVPHGYRRKSLFDVLTRCNVPLLRATWFVKVTYLNQVRPTSSSISTGASDNQRSNQWTKDVVEYLQQLLDEFSLKEAHLSFKEQPSAGLISGTTQVKLKNEAPSAGGDTEEPLVHFKWWYMVRLVQWHLTEELLVPSVLIEWSCHQLQERDSVEALELLLPIVLGLVETITLSQTYVRMFVEILVKRLSDASAVDNPKRSSISSVIAELLRYMVLAVPDTFVSLDCFPLPSFVAPDVYGRGALLKITGGGEMSSSKRRDVYRYLSCGYAVCSIQRRASDLATLASPNVHARGAAKVVQALDRALVTGNLTMAYSSLFNDLSDALMEERWIKEVSPCLQSSLMWIGTVELSLICSIFFLCEWATCDYRDCRTSPSQNVKLTGRRDLSQIHLAVSILKNKMTEMNKLSRSKSSSRIAVNNIGKGSSLNDASVAATKVGDSSGLRSNGKNEEEKKEKKDIFESPGPLHDIIVCWLDQHEVSSAAGFKRVDVLIIELIRSGVFYPQAYVRQLIISGVTDKNGTLLDMERKRRHHRILKQLPGSSLFDILEEDIVAEQQQLHEVLSTYSSERRLVLSELSSGQSFDASNRGGYTSSSYPRIPSGGTNHGGVPEQVEDVKVLVSSLLCFIYPHSAESEQNETKINFQGSSTSTLTQVDTGEAKIGCEDCMRINGQKLDERASPFQAFPLIQSDEEDVWWVRKGTELQESFKAEPALKSIKQTSRGRAKVVRKTQNLAQLTTAKIEGSQGEASTSHLCESKLSCPHHKPSTDGDNAKDADHTRMTNLAEVGKSLKKLRLLERRSISVWLLKSVRQLVEGNETTACKASNSISSFSSQPEDKTASKWRLGDEELMSILYILDTCCDLASATRFLVWLLAKIRGGQVGRSVAHMKNRDNHVCQVGEAFVFSSLLRYENILLATDLLPEVLNASTNRNFVLATARHPAPAAFPYTRYFLRKYRDVASVVRWEKNFRTTCDQRLLADLDNGRSIDGDFVSSSGVLGGEEIDDQVRQKLNGRGSRIIPNMKEIVQRQAEEIQRNLKEKKIPAAPKSPSFEKEDSYQIAHDTVLGLVECIRQNGGASPDGDPSAVASAVSAIVVNAGHVIAKHLDFAGGNYHGVASIGNSLSFVRHTLHIHISSLCLLKEALGDRFSRVFEVALAVEASSAVTAALAPPKVQRNQFQPSSETHDAYGNHTNEPLSTSGKGFVGRAAKLAAAISALVVGAVVHGAVSLERMIAVLKVKDGLEVQQVLRGLRPSTNGASRSSVTFKMDNSIEVLVHWFRILLGNCRTIYDGLIADILGESYVLALSRLQQKLPLSVVFPPAYSIFAMVRWRQYILSREDMQVYQSIANAINDITRHQPFRDICFRNTHQLYDLLAADVGDSEFAAMLETHCSDKNVKQLFVPLRGRLFLNSLVDCKTPAAIQVDGSEPGEAKENELKLLSERLVQSLDTLQPAKFHWQWVELRLLLDEQALAEKLDKAEKSKIPMPILMTLADGLRKLSPNSESFTLSESEKGFTEIILSRLVARPDAAPLYSEVVHLLGKLQESLVVDVKWILQGQDAVLGRKSTRQQLLTIATRRGVPIKAQVWKPWGWSSLLSDVMANRSAKRKLEAAPIEEGEVVDDSADAKRPSKSTLHINKYVTEKAFAELMLPCIDRSSPEFRSIFAGELIKQMGTVSEHIKAISRNGAKQVGLVPSGNDVSSNKSSGRKGIRGGSPNIGRRGTVGNDPTPPSASALQAIVWLRLQFIIRLLQVILADRGMRHTLAPAILSLLASRIIYEDADFPPPPASPIASRREVDSLLEPPMDVLLDRPSESLFERLLCVFHALLGNCKPSWMKSKPVSKPTVRAPSRDFPAFDNEVAVALQSALDHVELPGAIRRRIQAAMPILPPARHPSIHCQPPQLSLAALSPLQSIPSTSGPQQKSTSHSWVPTNISSRSKAVLPPQDPEMEVDPWTLLEDGTSCPSTSSGSNSASGITPDHSNLKACSWLKGAVRVRRTELTYIGSLDDDS
Length2195
PositionKinase
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.06
Grand average of hydropathy-0.280
Instability index50.89
Isoelectric point8.71
Molecular weight242528.89
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of development, heterochronic	GO:0040034	IEA:EnsemblPlants
regulation of radial pattern formation	GO:0090213	IEA:EnsemblPlants
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14975
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.36|      14|      48|     421|     434|       1
---------------------------------------------------------------------------
  421-  434 (26.54/17.13)	LPSFVAPDVYGRGA
  472-  485 (22.81/13.51)	LATLASPNVHARGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.79|      13|      30|     216|     228|       2
---------------------------------------------------------------------------
  216-  228 (24.62/14.52)	RATWFVK..VTYLNQ
  245-  259 (20.16/10.61)	RSNQWTKdvVEYLQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.50|      17|      17|      72|      88|       3
---------------------------------------------------------------------------
   52-   67 (22.06/10.87)	.PYRLKCDREPLNNKLG
   72-   88 (32.12/19.39)	YPQTPNCPEETLTKEYV
   92-  106 (22.32/11.09)	YKETVEGIEE..AREIV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.05|      18|      75|     642|     659|       4
---------------------------------------------------------------------------
  642-  659 (32.45/21.84)	EKKEKKD.IFES.PG.PLHDI
  716-  736 (19.59/ 9.75)	ERKRRHHrILKQlPGsSLFDI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     145.31|      46|      79|    1446|    1492|       5
---------------------------------------------------------------------------
 1446- 1492 (77.41/61.63)	SRSSVTFKMDNSIEVLVHWFRILLG.............................NCRTIYDGLIADIlGESYVLAL
 1499- 1573 (67.90/48.65)	LPLSVVFPPAYSIFAMVRWRQYILSredmqvyqsianainditrhqpfrdicfrNTHQLYDLLAADV.GDSEFAAM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.86|      27|      52|    2072|    2103|       6
---------------------------------------------------------------------------
 2072- 2103 (43.96/34.01)	ILPPaRHPSIHCQPPQLslaaLSPLQSIPSTS
 2126- 2152 (53.89/28.77)	VLPP.QDPEMEVDPWTL....LEDGTSCPSTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.37|      21|      23|     311|     331|       7
---------------------------------------------------------------------------
  311-  331 (40.27/29.25)	WYMVRLVQWHLTE..ELLVPSVL
  334-  356 (33.11/22.45)	WSCHQLQERDSVEalELLLPIVL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.99|      18|      23|     861|     878|       8
---------------------------------------------------------------------------
  861-  878 (31.31/18.50)	QKLDERASPFQAFPLIQS
  887-  904 (29.68/17.14)	RKGTELQESFKAEPALKS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      78.74|      20|      25|    1622|    1641|       9
---------------------------------------------------------------------------
 1622- 1641 (30.59/15.61)	ELKLL..SERLVQSLDTLQPAK
 1648- 1669 (24.69/11.26)	ELRLLldEQALAEKLDKAEKSK
 1671- 1687 (23.46/10.35)	PMPIL...MTLADGLRKLSP..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.38|      10|      23|     570|     579|      10
---------------------------------------------------------------------------
  570-  579 (16.88/11.41)	KLTGRRDLSQ
  590-  599 (17.50/12.14)	KMTEMNKLSR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.01|      38|      79|    1265|    1324|      11
---------------------------------------------------------------------------
 1265- 1309 (49.63/41.71)	ASpdgdpSAVASAVSAIVV..NAGHVIAKHLDfAGGNyHGVASIGNS
 1347- 1386 (60.38/44.76)	AS.....SAVTAALAPPKVqrNQFQPSSETHD.AYGN.HTNEPLSTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.36|      18|      47|    1710|    1737|      12
---------------------------------------------------------------------------
 1710- 1727 (30.42/ 9.22)	VARPDAAPLYSEVVHLLG
 1760- 1777 (31.94/18.84)	IATRRGVPIKAQVWKPWG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.64|      24|      47|    1840|    1863|      13
---------------------------------------------------------------------------
 1840- 1863 (42.02/26.44)	DRSSPE...FRSIFAG.ELIKQMGTVSE
 1884- 1911 (33.62/19.52)	DVSSNKssgRKGIRGGsPNIGRRGTVGN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.10|      10|      27|    1189|    1198|      17
---------------------------------------------------------------------------
 1189- 1198 (16.83/10.84)	EEIDDQVRQK
 1219- 1228 (16.28/10.23)	EEIQRNLKEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.11|      10|      16|    1101|    1110|      21
---------------------------------------------------------------------------
 1101- 1110 (17.27/10.03)	NILLATDLLP
 1120- 1129 (18.84/11.66)	NFVLATARHP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14975 with Med12 domain of Kingdom Viridiplantae
Unable to open file!