<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14973

Description Uncharacterized protein
SequenceMASKGGNKGEGPAIGIDLGTTYSCVGVWQHDRVEIVANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFGAKRLIGRRFSDASVQSDMKMWPFKVIPGAGDKPMIVVTYKGEEKTFSAEEISSMVLTKMREIAEAFLSTTINNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSTGEKNVLIFDLGGGTFDVSILTIEEGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDAKMDKTQVHEIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNQKVQDLLLLDVTPLSLGLETAGGVMTTLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTKDNNLLGKFELSGIPPAPRGVPQITVTFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIERMVQEAEKYKSEDEQVRHKVEARNALENYAYNMRNTVRDEKIASKLPDDDKKKIEDSIEDAIKWLDGNQLAEAEEFEDKMKELESICNPIISKMYQGAGPGGAAGMDEDMPSGGAGAGGGSGAGPKIEEVD
Length657
PositionUnknown
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.06
Grand average of hydropathy-0.444
Instability index35.31
Isoelectric point5.18
Molecular weight71860.42
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14973
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.90|      22|      26|      51|      76|       1
---------------------------------------------------------------------------
   55-   76 (39.45/30.48)	ERLIG....DAA.KNQVAMNPTNTVFG
   78-  104 (32.45/14.45)	KRLIGrrfsDASvQSDMKMWPFKVIPG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     134.97|      45|     189|     174|     222|       2
---------------------------------------------------------------------------
  174-  222 (62.96/54.23)	GLNVMRIINePTaAAIAYGLD.KKATSTGEKNVLIFDLggGTFDVSILTI
  366-  411 (72.01/45.41)	GKELCKSIN.PD.EAVAYGAAvQAAILSGEGNQKVQDL..LLLDVTPLSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.68|      14|      26|     575|     588|       3
---------------------------------------------------------------------------
  575-  588 (23.14/14.04)	DDKKKIEDSIEDAI
  603-  616 (25.54/16.18)	EDKMKELESICNPI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.42|      23|      26|     418|     441|       9
---------------------------------------------------------------------------
  418-  441 (34.70/24.72)	GVMTTLIPRNTTiPTKKEQVFSTY
  447-  469 (37.72/22.41)	GVLIQVYEGERT.RTKDNNLLGKF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.99|      18|      19|     116|     133|      10
---------------------------------------------------------------------------
  116-  133 (27.83/18.92)	KGEEKTFSAEEISSMVLT
  136-  153 (27.15/18.29)	REIAEAFLSTTINNAVVT
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14973 with Med37 domain of Kingdom Viridiplantae
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