<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14965

Description Uncharacterized protein
SequenceSIATDSQLAASNQAIFLRSRVLITVASFRFRLRAPFLFPPFELREEEEEERGEMAKGGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPSVQSDMKLWPFKVIPGPADKPMIVVQYKGEEKQFAAEEISSMVLIKMKEIGEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKASSSGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGVDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVFEGERARTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTAGVKNKITITNDKGRLSKEDIEKMVQEAERYKAEDEELKKKVEAKNALENYAYNMRNTIKDDKIASKLPADDKKKIEDAIDGAISWLDTNQLAEADEFEDKMKELEGVCNPIIAKMYQGAGVDMGGMGGAAGMDEDAPAGGSGAGPKIEEVD
Length705
PositionUnknown
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.06
Grand average of hydropathy-0.359
Instability index36.07
Isoelectric point5.08
Molecular weight77269.85
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
cytoplasm	GO:0005737	IBA:GO_Central

GO - Biological Function
ATP binding	GO:0005524	IBA:GO_Central
ATPase activity	GO:0016887	IBA:GO_Central
heat shock protein binding	GO:0031072	IBA:GO_Central
misfolded protein binding	GO:0051787	IBA:GO_Central
protein folding chaperone	GO:0044183	IBA:GO_Central
unfolded protein binding	GO:0051082	IBA:GO_Central

GO - Biological Process
cellular response to unfolded protein	GO:0034620	IBA:GO_Central
chaperone cofactor-dependent protein refolding	GO:0051085	IBA:GO_Central
protein refolding	GO:0042026	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14965
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     135.43|      45|     189|     223|     271|       1
---------------------------------------------------------------------------
  223-  271 (63.18/47.47)	GLNVMRIINePTaAAIAYGLDKKAS.SSGEKNVLIFDLggGTFDVSLLTI
  415-  460 (72.25/39.77)	GKELCKSIN.PD.EAVAYGAAVQAAiLSGEGNEKVQDL..LLLDVTPLSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.87|      16|      21|      66|      85|       2
---------------------------------------------------------------------------
   66-   81 (33.50/31.89)	DLG..TTYSCVGVWQHDR
   88-  105 (26.37/12.83)	DQGnrTTPSYVGFTDTER
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     330.58|     105|     280|     281|     386|       3
---------------------------------------------------------------------------
  281-  386 (173.89/146.19)	TAGDTHLGGEDFDnRMVNHFV......QEFKRK.HKKDISGNPRALRRLRTACERAKRTLSSTAQTTIE..IDSLYEGVDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMD
  563-  676 (156.69/125.94)	TNDKGRLSKEDIE.KMVQEAErykaedEELKKKvEAKNALENYAYNMRNTIKDDKIASKLPADDKKKIEdaIDGAISWLDTNQLAEADEFEDKMKELEGVCNPIIAKMYQGAGVD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     177.45|      57|     474|       2|      65|       5
---------------------------------------------------------------------------
    2-   65 (88.87/78.28)	IATDSQLAASNQAIF.....LRSRVLITV.ASFRFRLRAPFLFPPFELREEEEEERGemakggeGPAIGI
  473-  535 (88.58/62.24)	IPRNTTIPTKKEQIFstysdNQPGVLIQVfEGERARTKDNNLLGKFELSGIPPAPRG.......VPQITV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14965 with Med37 domain of Kingdom Viridiplantae
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