<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14945

Description Uncharacterized protein
SequenceDGGGRGRRGAEATSAPPEGRRRRRQPRRQLLRPHQHRPRQRPSRAQLAGGIPDGHARLPHGVHSADSLLKLVSELKRTAIFSGLASLSENVDRRIEVLSQQAEETERMLERIGQEAAASLKELEAHYYSSVVRTPLYD
Length138
PositionHead
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.03
Grand average of hydropathy-0.915
Instability index75.55
Isoelectric point10.91
Molecular weight15441.15
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14945
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.00|      14|      14|      17|      30|       1
---------------------------------------------------------------------------
   17-   30 (26.90/10.65)	PEGRRRRRQPRR.QL
   33-   47 (23.11/ 8.27)	PHQHRPRQRPSRaQL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14945 with Med22 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DGGGRGRRGAEATSAPPEGRRRRRQPRRQLLRPHQHRPRQRPSRAQLAGGIPDGHARLPHGVHSA
1
65










Molecular Recognition Features






MoRF SequenceStartStop




1) LLKLVSELKRTAIF
2) QLLRPHQHRPRQRPSRAQLAGGIPDGHARLPHGVH
3) RRIEVL
68
29
93
81
63
98