<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14928
Description |
Mediator of RNA polymerase II transcription subunit 13 |
Sequence | MRNLSSDDIEKVLTHTPRSVGEGLPVIVAPSGMLGRLVGCCPSDLARQVYSSKLSAPNLPGFTQPTICQLRGQSYYVEVALGFPPASTDKISESENNQIKKEFDSGKDPHLGDDGQQKLESADGLPVLERTFIYPPEAVMVPMVHQAFVRFSSKRMWSQDWMSSSSWEAWPFWNFSPSSYFRNSSFFGSSRGLGVNSNFLRLRRQRNNNSNGMASSISSVSSTSNGSEHAVAAKGGDLLADADSTACHQSDLPLNNDIAGSKMVSKRSRSEITEVSSHAGNEVRENMQGTNGQGGCSWGWGEEGVVMDINILLSEFGDFSDFFQEDELDFGEPPGTAESHALVTPASEFGDMPFIDSPSIAMDIPEQRLSPVGFTSMEAFNHETMSPIQDVASKVQEPLKEIASPAGSQSLVLSSSRSDFLTRAEATLTFAPEYAAVEISSCETPATLFTNPYLPGSKKRGSCGFSSRVYSYDVTQSSKVESAGDKSEKSDKLTPANLSRDVGRSSLYTLVQGRKNESEKSLNNADEQSCKGETSRPVSGETSFSSSLTIQKKSDSMLNVGYFLLSMKTALATEIECITFQAAMCRIRHTLVSLRTKASAELKSALSSAMQTESSSNSGLVPKYEMKRKETIPARLSSDVDHDMYDRSLLENVGVWRSVVVPKGAKPLDSLSAKTFTGTSPSVQRQPIVELLSAMALLVQQSTSFVDIALDIDDGDGSFFWLSLDEQRRRGFSCDPSMVHAGCGGLLGTCHSKDCAGVDLVDPLSAEVSESSMIGLLQSDIKSALKTAFANMDGPLSVIDWCRGRSNIAESAAMGDAYSFHYTSGDIRDTSNSIPIGGDAMSPPQSSNDRGTSEEHHKGYHRVRPTIAVLPSPSLLVGYQDDWLKTSADCLKLWEKAPLEPYASAKPVTYYALCPDIDMLTSAATDFFMQLGTIYEVCKLGTHSPQHSGGQIDQSPGKYLPSGLVLVDCPDQLKTSGSHSVSISSVTEYFQALSKSWSVKSFISSLARIIKDIKLTLNISTNQKESSNMPCTVVYVVCPFPEPSAVLQTLVESSVALGSILSSERERKSFLYTQVAKALNSSASADEASASNVVMLSGFSVPKFVLQIVTVETLLRLHKPNELAAFKDIAFTIYNKARRIPRFVSTSDMFQSPTYMSRPQSTMMHTASPGPTLWKECLVPRMSGQTLSRETEFDASMRSVSWDNSWQPGRAAGLPDPSKIPELCAQDDRKYAFEPLFILAEPGAVDYNDTMESSRFGVDASSSRAYSSISGGSDSGASPLLEGSENDSGTSLHCCYGWTEDWRWLVCIWTDSRGELLDSLVFPFGGISSRQDTKVLQSLFIQILQQGCQIMSSSPEASNTRSRDVIITRIGGFLELEIQEWQKAIYSFGGNEVKKWPVQLRRSIPDGIPSNSNGPTLQQQDMGLIQDRNMPSSPSTLYSPHSKSSFTKGQPGNKKQILAEQTGMDSSRGSLHLVRSISLVAVSQDSSLHLACQADLLATRPTSGEGNQSSTGSSSYLDGFAPVKSIGSMSASYLLVPSPSMRYLSPATLQLPTCLTSESPPLAHLLHSKGTATPLAMGYVVSKAVPPVRMNAAQLTKEDRHSVLSVSIVDYYGGGTATVQEKMSRGVGGSTTSKQARNISHETSARDYEMDMHNVLEAVAAELHALSWMTVSPVYTERRSALPFHCDMVLRLRRLLHYADRHLSQLTVKGEM |
Length | 1712 |
Position | Kinase |
Organism | Hordeum vulgare subsp. vulgare (Domesticated barley) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade>
Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.300 |
Instability index | 59.47 |
Isoelectric point | 5.62 |
Molecular weight | 186068.15 |
Publications | PubMed=23075845
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364134
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP14928
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 748.38| 247| 275| 930| 1203| 1
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930- 1203 (369.84/279.13) QLGTiyevcKLGTHSPQHSGGQIDQSPGKYLPSGLVL......VDCPDQLKTSgSHSVSISSVTEYFQALSKSWSVKSFIssLARIIKDIKLTLNISTNQKES.SNMPC........TVVYVVCPFPEPSAVLQTLVESSVALgSILSsererksflytQVAKALNSSASADEASASNVVM..LSGF...SVPKFVLQIVTV........ETLLRLHKPNELAAFKDiAFTIYNKARRIprfVSTSDMFQSPTYMSRPQSTMMHT.ASPGPtlwKECLVPRMSGQTLSRETEF...DASMRSVSWD
1207- 1485 (378.54/224.77) QPGR.....AAGLPDPSKIPELCAQDDRKYAFEPLFIlaepgaVDYNDTMESS.RFGVDASSSRAYSSISGGSDSGASPL..LEGSENDSGTSLHCCYGWTEDwRWLVCiwtdsrgeLLDSLVFPFGGISSRQDTKVLQSLFI.QILQ...........QGCQIMSSSPEASNTRSRDVIItrIGGFlelEIQEWQKAIYSFggnevkkwPVQLRRSIPDGIPSNSN.GPTLQQQDMGL...IQDRNMPSSPSTLYSPHSKSSFTkGQPGN...KKQILAEQTGMDSSRGSLHlvrSISLVAVSQD
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 127.60| 33| 34| 491| 523| 2
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444- 487 (29.43/12.20) ...TPATLFTNpylpgskkrgsC.GFSSrvySYDVTQSSKVESAGDKS
491- 523 (53.51/28.44) DKLTPANLSRD...........V.GRSS...LYTLVQGRKNESEKSLN
527- 559 (44.67/22.48) EQSCKGETSRP...........VsGETS...FSSSLTIQK.KSDSMLN
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 80.10| 22| 54| 144| 165| 3
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144- 165 (42.05/27.98) VHQAFVRFSSKRMWSQDWMSSS
195- 216 (38.05/24.54) VNSNFLRLRRQRNNNSNGMASS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 163.23| 52| 54| 307| 359| 4
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307- 359 (88.08/49.60) MDI.NILLSEFGdFSDF..FQEDELDFGEPPGTAESHALVTPASEFGDMPFIDSPS
362- 416 (75.15/38.03) MDIpEQRLSPVG.FTSMeaFNHETMSPIQDVASKVQEPLKEIASPAGSQSLVLSSS
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