<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14911

Description Mediator of RNA polymerase II transcription subunit 13
SequenceMWTNIFKIGELQTVSWFQFLPIEPDYSATSDRSSKAEQKDALNNTVLSAYLRLQSEGLLSTWTNSFVGPWDPSQGEHNPDEKIKLWLFLSGRHSSVPEMTQPAVAKLRVVSSDLWVAPGNSEEVAAALCQALRNSLERALRGLSYARFGDVFTKYNPPTRNQNSFRRAQPTVEFVFAATEEAIFVHVIISARYMRNLSSDDIEKVLTHTPRSVGEGLPGTVAPSGMLGRLVGCCPSDLARQVYSSKLSAPNLPGFTQPTICQLRGQSYYVEVALGFPPASTDKISESENNQIKKEFDSGKDPHLGDDGQQKLESADGLPVLERTFIYPPEAVMVPMVHQAFVRFSSKRMWSQDWMSSSSWEAWPFWNFSPSSYFRNSSFFGSSRGLGVNSNFLRLRRQRNNNSNGMASSISSVSSTSNGSEHAVAAKGGDLLADADSTACHQSDLPLNNDIAGSKMVSKRSRSEITEVSSHAGNEVRENMQGTNGQGGCSWGWGEEGVVMDINILLSEFGDFSDFFQEDELDFGEPPGTAESHALVTPASEFGDMPFIDSPSIAMDIPEQRLSPVGFTSMEAFNHETMSPIQDVASKVQEPLKEIASPAGSQSLVLSSSRSDFLTRAEATLTFAPEYAAVEISSCETPATLFTNPYLPGSKKRGSCGFSSRVYSYDVTQSSKVESAGDKSEKSDKLTPANLSRDVGRSSLYTLVQGRKNESEKSLNNADEQSCKGETSRPVSGETSFSSSLTIQKKSDSMLNVGYFLLSMKTALATEIECITFQAAMCRIRHTLVSLRTKASAELKSALSSAMQTESSSNSGLVPKYEMKRKETIPARLSSDVDHDMYDRSLLENVGVWRSVVVPKGAKPLDSLSAKTFTGTSPSVQRQPIVELLSAMALLVQQSTSFVDIALDIDDGDGSFFWLSLDEQRRRGFSCDPSMVHAGCGGLLGTCHSKDCAGVDLVDPLSAEVKIWCSVFFCHLYLSMHLFSMSFSGYRFQNHP
Length992
PositionKinase
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.09
Grand average of hydropathy-0.333
Instability index54.63
Isoelectric point5.39
Molecular weight108684.54
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14911
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.90|      25|      28|     750|     777|       1
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  752-  777 (37.62/40.67)	NVGYFLLSMKTALATEIECiTFQAAM
  779-  803 (38.28/26.23)	RIRHTLVSLRTKASAELKS.ALSSAM
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.82|      33|     135|     668|     701|       2
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  668-  700 (51.59/32.84)	TQSSKVESAGDKSEKSDKLTPANLSRDV.GRSSL
  704-  737 (50.23/26.39)	VQGRKNESEKSLNNADEQSCKGETSRPVsGETSF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.96|      22|      30|     493|     521|       4
---------------------------------------------------------------------------
  493-  515 (37.49/34.11)	WGEEGVVMDINILL...SEFGDFsDF
  523-  547 (37.48/16.32)	FGEPPGTAESHALVtpaSEFGDM.PF
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     307.46|     117|     636|     189|     308|       5
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   97-  252 (169.79/89.95)	PEMTQPAVAKLRVVSSDLWVAPGNSEEVAAALCQALRNSLERALRGLSYARFGDvftkyNP.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ptrnqnsfrraqptvefvfaateeaifvhviISARYMRNLSSDDIEKVLTHTP...RSVgeGLPGTVAPSGMLG..RLVGCCPSdLARQVYSSKLSAPNL
  253-  308 (70.57/29.75)	PGFTQPTICQLRGQSYYVEVALGFPPASTDKISESENNQIKKEFDSGKDPHLGD.....DG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
  825-  890 (67.10/28.58)	.............................................................qqklesadglpvlertfiyppeavmvpmvhqafvrfsskrmwsqdwmssssweawpfwnfspssyfrnssffgssrglgvnsnflrlrrqrnnnsngmassissvsstsngsehavaakggdlladadstachqsdlplnndiagskmvskrsrseitevsshagnevrenmqgtngqggcswgwgeegvvmdinillsefgdfsdffqedeldfgeppgtaeshalvtpasefgdmpfidspsiamdipeqrlspvgftsmeafnhetmspiqdvaskvqeplkeiaspagsqslvlsssrsdfltraeatltfapeyaaveisscetpatlftnpylpgskkrgscgfssrvysydvtqsskvesagdkseksdkltpanlsrdvgrsslytlvqgrknesekslnnadeqsckgetsrpvsgetsfsssltiqkksdsmlnvgyfllsmktalateiecitfqaamcrirhtlvslrtkasaelksalssamqtesssnsglvpkyemkrketIPARLSSDVDHDMYDRSLLENVgvwRSV..VVPKGAKPLDSLSakTFTGTSPS.VQRQPIVELLSAMAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.98|      28|     507|     424|     451|       8
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  424-  451 (49.79/33.01)	VAAKGGDLLADADSTACHQSDL..PLNNDI
  932-  961 (48.19/31.70)	VHAGCGGLLGTCHSKDCAGVDLvdPLSAEV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14911 with Med13 domain of Kingdom Viridiplantae
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