<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14900

Description Uncharacterized protein
SequenceMRNISSKLLIMEKRTSEHLERRKQLRNQLQLANTGQALQGGNSSVRPEAGMMATPRPTSQPMMPQTSGLVPNQHMVYPRTTNLQIEVEQKHPGVMTIPDQRPKFQPKGITTVRPGVSPWQMQSGASQSQSKYASRQAQTTNFVGCSPPSVSKPARGLTSLHNHQPGQNGSSVGKQQPQLTRMNQRSLSANQQEMDMQKYQMLIAQQTDISKMQPSQLGGWNNQKDTRQSNLLRSPVEASEREPVTSPLQQIADAQQSTLLCQNSQNTATMDSAREYDLIEGMFLQQIKSWKDAYFTQFVELERRIVVPTLTEEQFLSLPEAKANEYKRKAYAKKSIRKILNFLLLVKSDVNEGLKLDFPKYKEDIHKLVAFIDRGKAHNAEMNTGYQLQNCHEQPQVINLTGNASSISGGKRQQKQPADTSILQSRQTNMARTPPPHEQSNGNHLLGIASPSFSSPGSLPSCSSNMFESSTPTPVANPVVAPASCCAPLIPMDVDSISAFLLHDNSAPPSPKVNGSDQVTRTKLTIPSSPCQADIAAGQAEVQAGGGDGTPVTEKPIDRLLDAIRSSSPAALRSSANSIWSVLSISDTVPHGQIGANMDGKFFQQQWGGYNTVRKMKRVFNDTATHSESLPLGSMDGSCMAFECDASNSGSSSEQNIKRPKTPVTRLVISFLSSFQSNAHIFFYLLKLT
Length689
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.05
Grand average of hydropathy-0.594
Instability index61.95
Isoelectric point9.35
Molecular weight75687.68
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14900
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      91.17|      22|      26|      55|      79|       1
---------------------------------------------------------------------------
   34-   52 (25.97/ 7.56)	.....TGQA..LQGGNSSVRPEAGMM
   55-   76 (43.04/29.37)	P..RPTSQP..MMPQTSGLVPNQHMV
   98-  120 (22.16/ 7.71)	PdqRPKFQPkgITTVRPGVSPWQ...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.46|      26|      27|     132|     157|       2
---------------------------------------------------------------------------
  132-  157 (45.47/23.02)	YASRQAQTTNFVGCSPPSVSK.PARGL
  161-  187 (41.99/20.72)	HNHQPGQNGSSVGKQQPQLTRmNQRSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.88|      26|      26|     314|     339|       3
---------------------------------------------------------------------------
  314-  339 (42.58/28.69)	QFLSLPEAKANEYKRKAYA..KKSIRKI
  341-  368 (38.30/25.17)	NFLLLVKSDVNEGLKLDFPkyKEDIHKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.62|      18|      21|     445|     462|       4
---------------------------------------------------------------------------
  445-  462 (32.47/18.56)	LLGIASPS.FSSPGSLP.SC
  466-  485 (24.15/11.81)	MFESSTPTpVANPVVAPaSC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.63|      15|      21|     379|     395|       5
---------------------------------------------------------------------------
  379-  395 (23.94/19.61)	NAEMNTGYQLQncHEQP
  403-  417 (26.69/14.04)	NASSISGGKRQ..QKQP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14900 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) NISSKLLIMEKRTSEHLERRKQLRNQLQLANTGQALQGGNSSVRPEAGMMATPRPTSQPMMPQTSGLVPNQHMVYPRTTNLQIEVEQKHPGVMTIPDQRPKFQPKGITTVRPGVSPWQMQSGASQSQSKYASRQAQTTNFVGCSPPSVSKPARGLTSLHNHQPGQNGSSVGKQQPQLTRMNQRSLSANQQEMDMQKYQMLIAQ
2) NLTGNASSISGGKRQQKQPADTSILQSRQTNMARTPPPHEQSNGNHLLGIAS
3) SKMQPSQLGGWNNQKDTRQSNLLRSPVEASEREPVTSPLQ
3
399
210
205
450
249










Molecular Recognition Features






MoRF SequenceStartStop




NANANA